Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1666
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   2.9  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   6.7  
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    25   8.9  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 615 LLCSHEYNKVYRDARP 568
           L C HE+N +YRD +P
Sbjct: 341 LECLHEFNVIYRDLKP 356


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 678 STWNQTKPLFQQNNCSVNGGRLLCSHEYN--KVYRDARPPQRGPQRMH 541
           S   +TKP+F++ N  VNGG L+ +H  +     ++A    RG +  H
Sbjct: 15  SRCKRTKPIFREPNSPVNGG-LVYNHPLHTAAAVKEAFSENRGFRTCH 61


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 708 CVLSSLRVSNSTWNQTKPLFQQNNCSVN 625
           C L ++   NS W +  PL+ +  C  N
Sbjct: 484 CFLPTIEAGNSQWWELLPLYTKAGCITN 511


>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 354 DPVEAARGVGGACWKRAC 301
           DP+E    +G A W +AC
Sbjct: 167 DPIETISSIGQASWGKAC 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,926
Number of Sequences: 5004
Number of extensions: 58046
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)