Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1666
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501           31   1.3  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   7.0  
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    28   7.0  
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    28   7.0  
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    28   9.3  

>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
          Length = 506

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 121 RWGPLAASTPQLFVGSHLNSSVSRQQQMRDESISK 17
           RW PL  STP + V +HL SS S      D+S  K
Sbjct: 82  RWRPLWRSTPLVLVDAHLLSSSSAAPGAPDDSSKK 116


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 115 GPLAASTPQL-FVGSHLNSSVSRQQQMRDESISKG 14
           GPLAAS PQL ++    +    R+++M   S+S G
Sbjct: 550 GPLAASPPQLPYIEHERDKGRKREREMASVSVSTG 584


>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 165 SERGRSPVPCPLGRSAGVRWPR 100
           +ER R  VP P G  A +RWPR
Sbjct: 125 AERRRCLVPAPRGYRAPLRWPR 146


>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 484 SNSYSLAFCKALPGPSAPGLRHQKEPRR 401
           S++ S++ C A P PSA G +  + PRR
Sbjct: 22  SSAASISCCAAPPPPSAKGSQESRTPRR 49


>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 546 MHGVRFSGQLRALQVAVQCGYRIVIHWHFVKHSQDRAPPDYATR 415
           MH    +  +R        GYR +++W   K S+  A   YA R
Sbjct: 108 MHEEHANHPIREYDAGSMKGYRYLVYWRLDKTSKIEAATSYAAR 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,464,549
Number of Sequences: 37544
Number of extensions: 461017
Number of successful extensions: 1319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)