Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1666
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ007041-1|CAB45385.1| 2715|Homo sapiens trithorax homologue 2 p...    35   0.37 
AK055237-1|BAB70884.1|  151|Homo sapiens protein ( Homo sapiens ...    31   6.0  

>AJ007041-1|CAB45385.1| 2715|Homo sapiens trithorax homologue 2
           protein.
          Length = 2715

 Score = 34.7 bits (76), Expect = 0.37
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +3

Query: 111 GPQRTSPRGREPGTDRALTRLLGYSRHLERI 203
           G   T P G EPG D AL RLLG  R L R+
Sbjct: 50  GGGATGPGGAEPGEDTALLRLLGLRRGLRRL 80


>AK055237-1|BAB70884.1|  151|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30675 fis, clone FCBBF1000760. ).
          Length = 151

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 97  STRPTDPSGP--PQGAGNRGPTAL*LDYWDTAAT*SVY*IGTT*VVCFK 237
           ST+PTDP GP  P+G G R  +AL      +    + + +G + +VC++
Sbjct: 69  STQPTDPKGPWLPRGGGLRSSSALEPTLRKSQGRRTDWLLGASPIVCWQ 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,015,990
Number of Sequences: 237096
Number of extensions: 2503782
Number of successful extensions: 11238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11225
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)