Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1665
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.043
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 2.2
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.0
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 5.0
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 5.0
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 26 6.6
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.6
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 25 8.7
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.1 bits (72), Expect = 0.043
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 453 QEHIHGPTGRRHANGNKI*KTYQKPKDRAHHLASEAESMAEDDGSWSPLSGP-SKGQSRG 629
+EH GP + H G K + ++ PKD+ HH + + + GP K +G
Sbjct: 362 KEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQG 421
Query: 630 PVSAHS 647
P H+
Sbjct: 422 PKEKHN 427
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 456 EHIHGPTGRRHANGNKI*KTYQKPKDRAHHLASEAESMAEDDGSWSPLSGP-SKGQSRGP 632
EH GP + H G K + ++ PKD+ HH + + + GP K +GP
Sbjct: 354 EHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGP 413
Query: 633 VSAHSMHEVPR 665
H+ P+
Sbjct: 414 KDKEH-HQGPK 423
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 201 GEHLVSSLLTTFESDCHRMKCRTVDGFGCCDAGV*LRDWS 82
GE LV S+L +DC R C+ GF C ++ W+
Sbjct: 165 GEKLVKSILA--HNDCVRSLCQIPGGFASCSNDGVIKLWT 202
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 322 EIIESRGDGLVVAPMKNKSPLVVLKDV-FVESEDDDMIKALHVQNKNIFMGLPEEDMQME 498
+I++S GD A KS L ++ + + + + I ++ ++NKNIF+ + +
Sbjct: 367 KILQSTGD--FSAATSKKSGLTKKTNIPYSPNSNHEEINSIPLRNKNIFVPPSQGHSPLL 424
Query: 499 IKFKKRTRNPKTAHI 543
K KK+ P T +
Sbjct: 425 EKIKKQGSLPSTTPV 439
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 301 EERKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFMGLPE 480
+ RK++QE+ +S GD + N+ + + VES D I L QN + L E
Sbjct: 106 QNRKRIQELEKSLGDAEEALKLSNEETVTLTAQ--VESLTQD-ITDLRQQNAS----LVE 158
Query: 481 EDMQMEIKFKKRTRNPKTAH 540
E+ + + K+ R + H
Sbjct: 159 ENQLLSTQSKQWERRARDEH 178
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 276 SLVFRLAYLVNFKSSASGVDCPLHPGEHLVS 184
+++ L YLVNF S S P H HL S
Sbjct: 21 TIINSLVYLVNFISCPSIHSIPFHISTHLTS 51
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 374 LFFMGATTSPSPRLSIISWTFFLSSSVSQPNIIVWFFALRTLLILS 237
+FF+ S + +S+ S S+S PN ++ F+L T++++S
Sbjct: 193 MFFILLNASSAISMSLYLLYRVSSFSISNPNALMIGFSLATVIVIS 238
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 95 SHTPASQQPNPSTVLHFIRW---QSLSKVVRRLLTRC 196
S P QP+P TV+H + S VV+ TRC
Sbjct: 286 SSKPQPLQPDPETVIHLVPTVLAGDKSSVVKTCCTRC 322
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 307 RKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFM 468
+ K+Q + S + L K K P++ L D++++ ++ ++K N F+
Sbjct: 899 KNKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYIDESNERVVKGKSKDNFEYFL 952
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 286 GCDTEEERKKVQEIIESRGDGLV---VAPMKNKSPLVV--LKDVFVESEDDDMIKALHVQ 450
G E+R++++ I D V + +K +V+ +KDV DD+++K +
Sbjct: 5 GLSLAEKRRRLEAIFHDSKDFFQLKEVEKLGSKKQIVLQTVKDVLQSLVDDNIVKTEKIG 64
Query: 451 NKNIFMGLPEE 483
N + P +
Sbjct: 65 TSNYYWSFPSD 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,107
Number of Sequences: 5004
Number of extensions: 65133
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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