Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1665
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1056 + 27239176-27242361 33 0.32
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 31 0.74
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 31 0.98
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 25 1.2
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 29 3.0
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 29 3.0
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 29 3.9
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 29 3.9
01_06_0185 - 27293280-27293606 29 5.2
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 28 6.9
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 28 6.9
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 28 6.9
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 750 GHF-RADAVLPXVTASVHTLGAKFSTMSKCEAPRALNERRLV-LDSDPLKVQIEGSSFR 580
G F R DAV+ + +GA + M++CEA R++ R L+ + + + +EG+ FR
Sbjct: 753 GEFAREDAVVAVKVLDLRQVGASKTFMAECEALRSVKHRNLINIVTCCSSIDMEGNEFR 811
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 285 GLRHRGGKKESPRDNRESWGWTGSSAHEEQEPSRC 389
G H G + + PRD R S G T S EEQ P++C
Sbjct: 174 GSEHDGEEDDDPRDGR-SDGDTAGSRGEEQPPAQC 207
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/72 (25%), Positives = 40/72 (55%)
Frame = +1
Query: 421 DDMIKALHVQNKNIFMGLPEEDMQMEIKFKKRTRNPKTAHIILQVKPKVWQRMTEAGALY 600
+D++K L + + + + + EE +ME K K+ PK +++ + +V +R+ E Y
Sbjct: 69 EDILKILDMSEEELAV-VKEEWAEMEAKEKEEA--PKVKETMVEWEARVKKRIEEENKAY 125
Query: 601 LDLQRVRVEDQS 636
++ R + +D+S
Sbjct: 126 REMMRSQDDDES 137
>06_03_0136 +
17056256-17056420,17056864-17057036,17057272-17057297,
17057524-17057922,17058190-17058265,17058432-17058507,
17058930-17059013,17059446-17059570,17060146-17060389,
17060968-17061031,17061218-17061726
Length = 646
Score = 25.4 bits (53), Expect(2) = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 531 DRAHHLASEAESMAEDDGSWSPLSGPSKGQS 623
DR +S E++ DDG+W+P + S+ S
Sbjct: 590 DRGWRSSSGYENLPADDGAWTPHAYSSRQYS 620
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 357 SAHEEQEPSRCPEGCFRGK*RRRYD*GTPRPKQEHIHGPTGRRHANG 497
S+ +E R P G R YD G P H G R ++G
Sbjct: 552 SSDSREERDRGPPGADRYSRYHSYDYGPASPSHGRSHPDRGWRSSSG 598
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 543 HLASEAESMAEDDGSWSPLSGPSKGQSRGPVS-AHSMHEVP 662
H++ EA M S P+ G S+GP+S A S++ VP
Sbjct: 235 HISKEATIMVSTVNKSSNFKRPTTGSSKGPISNAESLNVVP 275
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/65 (30%), Positives = 39/65 (60%)
Frame = +1
Query: 310 KKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFMGLPEEDM 489
K+ +EII+ + D +VV K K ++ L + E +D+I +L Q +++FM + E++
Sbjct: 561 KEKEEIIKEKDD-IVVRLTKEKEEIIKLLE-----EKEDII-SLMKQKEDMFMSIKEKEN 613
Query: 490 QMEIK 504
+ E+K
Sbjct: 614 KAELK 618
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +3
Query: 471 PTGR-RHANGNKI*KTYQKPKDRA-----HHLASEAESMAEDDGSWSPLSGPSKGQSRGP 632
PTG HA+ N+ K KPK + H S ++ A S S +SG S GQS G
Sbjct: 270 PTGDDNHADENEA-KAPNKPKGKVSISTTHPNGSNKKNGANHKKSHSDISGSSSGQSAGV 328
Query: 633 VSAHSM 650
+ +S+
Sbjct: 329 LPTNSL 334
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 441 PRPKQEHIHGPTGRRHANGNKI*KTYQKPKDRAHHLASEAESMAEDDGSWS 593
P P Q+ + P GN QK K+R+H + + +A D SWS
Sbjct: 533 PNPWQQGLQIPDSDVVVEGNCARVVCQKNKERSHVIVNPGSDLALCDCSWS 583
>01_06_0185 - 27293280-27293606
Length = 108
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 291 RHRGGKKESPRDNRESWGWTGSSAHEEQEPSR 386
++ GG K++ R +E WG G A ++P R
Sbjct: 31 KNEGGAKDTERGKKERWGSGGGGAVGARQPHR 62
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 587 LEPSIWTFKGSESRTSLRSFNARGASHLDMVENFAPR-VWTDAVT 718
LEPS+WT +G E S R N+ LD N P V T+ VT
Sbjct: 327 LEPSMWTMQG-EVNASSRPKNSALEVDLDFEHNVRPAPVITEEVT 370
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/94 (23%), Positives = 44/94 (46%)
Frame = +1
Query: 154 AVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIE 333
AVT E D+ L + R VD G G+ + + + D +EE K+ E+++
Sbjct: 273 AVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLD 332
Query: 334 SRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIK 435
+G ++P + ++ + L + + E + MI+
Sbjct: 333 KDQNGF-ISPTELRTVMTNLGEKMTDEEVEQMIR 365
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 122 LAAATLAYDLETGARFISHTSPFATS 45
LA L+YD+ ARFIS P++T+
Sbjct: 593 LATCDLSYDVRDRARFISRLLPYSTT 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,615,969
Number of Sequences: 37544
Number of extensions: 490316
Number of successful extensions: 1522
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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