Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1663
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   277   4e-75
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   275   1e-74
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    45   5e-05
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   1.1  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.4  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   4.5  
At1g43730.1 68414.m05028 hypothetical protein                          28   4.5  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   7.9  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   7.9  
At5g28615.1 68418.m03493 hypothetical protein                          27   7.9  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   7.9  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  277 bits (679), Expect = 4e-75
 Identities = 130/181 (71%), Positives = 156/181 (86%)
 Frame = +3

Query: 9   VNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 188
           VN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AAREL
Sbjct: 2   VNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAAREL 61

Query: 189 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 368
           LTL+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+A
Sbjct: 62  LTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMA 121

Query: 369 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 548
           KSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R 
Sbjct: 122 KSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERA 181

Query: 549 G 551
           G
Sbjct: 182 G 182


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  275 bits (675), Expect = 1e-74
 Identities = 126/169 (74%), Positives = 151/169 (89%)
 Frame = +3

Query: 33  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 212
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 213 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 392
           +R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 393 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 539
           LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 29/123 (23%), Positives = 56/123 (45%)
 Frame = +3

Query: 87  QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 266
           +E +I   Y + ++ +  +       ++K    +  ++  DP R+   + LL +L  +GV
Sbjct: 27  RENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGV 86

Query: 267 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 446
           +  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  + +  P+
Sbjct: 87  IPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPA 145

Query: 447 FIV 455
           F+V
Sbjct: 146 FLV 148


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 512 TSTEWRFQREVNVLARVQAHN 450
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 39  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 155
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 278 TDETRLCAWSED*GLLGASSADAGVQSW 361
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 396 SKFWHDGWTSPGQL 355
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 340 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 447
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 246 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 347
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 396 SKFWHDGWTSPGQL 355
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 108 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRL 251
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,902
Number of Sequences: 28952
Number of extensions: 260563
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)