Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1658
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   112   5e-26
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   111   7e-26
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   2.0  

>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  112 bits (269), Expect = 5e-26
 Identities = 53/119 (44%), Positives = 73/119 (61%)
 Frame = -3

Query: 536 KMIKXGLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXANAXMPQKELWVQXQXXX 357
           K+IK GLVI+KP  +HS  R+RK   A+R GRH G+GKR+G A A MP   +W++ Q   
Sbjct: 43  KLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVL 102

Query: 356 XXXXXXXXXXXXXXRHXXHSLYMKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
                         +H  H+LY++AKGN FK KR L+E+I R K E  RTK++ +Q +A
Sbjct: 103 RRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDA 161



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = -2

Query: 645 RRGLQPXVMRCGKKKVWWDPNEINEIANXNSRQNI 541
           ++ L   V++CGK+KVW DPNEI+EI+N NSRQN+
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNV 41


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  111 bits (268), Expect = 7e-26
 Identities = 52/119 (43%), Positives = 73/119 (61%)
 Frame = -3

Query: 536 KMIKXGLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXANAXMPQKELWVQXQXXX 357
           K++K GLVI+KP  +HS  R+RK   A+R GRH G+GKR+G A A MP   +W++ Q   
Sbjct: 43  KLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVL 102

Query: 356 XXXXXXXXXXXXXXRHXXHSLYMKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
                         +H  H+LY++AKGN FK KR L+E+I R K E  RTK++ +Q +A
Sbjct: 103 RRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDA 161



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = -2

Query: 645 RRGLQPXVMRCGKKKVWWDPNEINEIANXNSRQNI 541
           ++ L   V++CGK+KVW DPNEI+EI+N NSRQNI
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNI 41


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 508 LMTRPSLIILPDVLSGVGVCDLIDFIW 588
           ++ RP + + P++L+ VG CD    +W
Sbjct: 191 VIVRPGIWLFPNLLADVGFCDSFKPLW 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,741
Number of Sequences: 5004
Number of extensions: 26918
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)