Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1658
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   118   6e-27
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   118   6e-27
07_03_1639 + 28305801-28305958,28306240-28306249                       32   0.50 
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416     28   6.2  
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881...    28   8.2  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  118 bits (283), Expect = 6e-27
 Identities = 56/119 (47%), Positives = 72/119 (60%)
 Frame = -3

Query: 536 KMIKXGLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXANAXMPQKELWVQXQXXX 357
           K++K G +IKKP  +HS +R R+   A++KGRH G+GKRRG   A +P K LW++     
Sbjct: 43  KLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVL 102

Query: 356 XXXXXXXXXXXXXXRHXXHSLYMKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
                         +H  H +YMK KGN+FK KRVLME I + K EKAR K LSDQ EA
Sbjct: 103 RRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEA 161



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -2

Query: 645 RRGLQPXVMRCGKKKVWWDPNEINEIANXNSRQNI 541
           ++ L   V++CGK KVW DPNE+NEI+  NSRQNI
Sbjct: 7   QKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNI 41


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  118 bits (283), Expect = 6e-27
 Identities = 56/119 (47%), Positives = 72/119 (60%)
 Frame = -3

Query: 536 KMIKXGLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXANAXMPQKELWVQXQXXX 357
           K++K G +IKKP  +HS +R R+   A++KGRH G+GKRRG   A +P K LW++     
Sbjct: 43  KLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVL 102

Query: 356 XXXXXXXXXXXXXXRHXXHSLYMKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
                         +H  H +YMK KGN+FK KRVLME I + K EKAR K LSDQ EA
Sbjct: 103 RRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEA 161



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -2

Query: 645 RRGLQPXVMRCGKKKVWWDPNEINEIANXNSRQNI 541
           ++ L   V++CGK KVW DPNE+NEI+  NSRQNI
Sbjct: 7   QKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNI 41


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 290 MKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
           MK KGN+   KR       + + EKAR + LSDQ EA
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEA 37


>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
          Length = 302

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 521 GLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXA 408
           G+ +K+    H  +    +    R+GRH G+G+RR  A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249


>01_06_0906 +
           32886693-32886919,32887589-32887708,32887978-32888101,
           32888224-32888361,32888492-32888701,32889085-32889232,
           32890452-32890801,32890909-32890963,32891087-32891382,
           32891480-32891531,32891740-32891947,32892064-32892446,
           32894102-32894538,32895452-32895643
          Length = 979

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 575 LISFGSHHTFFLPHRITX----GCKPLLQLEGTHS*HRGDPTXKKK 700
           LI F   H  +  HR+      G KP+L  +G H   +GD   K++
Sbjct: 70  LIHFADWHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRE 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,367
Number of Sequences: 37544
Number of extensions: 203387
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)