Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1658
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   121   6e-28
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  121 bits (291), Expect = 6e-28
 Identities = 56/119 (47%), Positives = 74/119 (62%)
 Frame = -3

Query: 536 KMIKXGLVIKKPVAVHSXARVRKNTXARRKGRHCGFGKRRGXANAXMPQKELWVQXQXXX 357
           +++  GL+I+KPV VHS  R R+   ARRKGRH G+GKRRG ANA MP+K LW++     
Sbjct: 43  RLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVL 102

Query: 356 XXXXXXXXXXXXXXRHXXHSLYMKAKGNVFKXKRVLMEYIXRKKXEKARTKMLSDQXEA 180
                         +H  H LY++AKGN FK K+ L+EYI +KK E  R K L+DQ +A
Sbjct: 103 RNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQA 161



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = -2

Query: 645 RRGLQPXVMRCGKKKVWWDPNEINEIANXNSRQNI 541
           ++ L   V++CGK +VW DPNE++EI+  NSRQ+I
Sbjct: 7   QKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSI 41


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 508 LMTRPSL--IILPDVLSGVGVCDLIDFI 585
           ++TRPS+  + + + L G+G+CDLI  I
Sbjct: 51  VLTRPSMRALTINNFLLGIGICDLIGMI 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,841
Number of Sequences: 27780
Number of extensions: 162849
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)