Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1657
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 32 0.048
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.79
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 1.4
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 4.2
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 25 5.6
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 5.6
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 25 5.6
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 9.7
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.7
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 32.3 bits (70), Expect = 0.048
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +3
Query: 69 DRTCYRRGQRTQTPRNTERSS*IDQDRTIENFKRKRRSNRPGSIRRATGGSRAGPQPRAE 248
DR Y + ++ P R+S D D +R+ RS RPG R R P P AE
Sbjct: 170 DRAPYEESRLSRAP---SRASRYDDDDRDHRSRRRSRSRRPGRSRSRRRSRR--PSPSAE 224
Query: 249 H 251
H
Sbjct: 225 H 225
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 284 EDEVIAPPMPLEVLIENVKVHLVEDRPVRSILSPPPQPLDIDLTTLRVTRASDGV 448
E+E P +P +VH + +LSPPP + D TL A + V
Sbjct: 565 EEETKGPVIPETQETSEQQVHKTPSPEKQKVLSPPPIITNFDKETLASNEAHEAV 619
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 90 GQRTQTPRNTERSS*IDQDRTIENFKRKRRSNRPGSIRRATGG 218
G+ + TE+ I D +++ KR++ SNR S+ R+ GG
Sbjct: 378 GRSPNSMEATEQIGTIGTDGSMKRRKRRQPSNRKTSVPRSPGG 420
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 311 PLEVLIENVKVHLVEDRPVRSILSPPP---QPLDIDLTTLRVTRASDGVLRL 457
PL V +E VHL E + V + S +PL I+ TTL VT G L +
Sbjct: 675 PLSVSVEVQDVHL-ETKGVSAKCSHSTFTMRPLSIERTTLTVTPTETGELHI 725
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 272 SEFIEDEVIAPPMPLEVLIENVKVHLVEDRPVRSILSPPPQPLDI 406
S F+E +V M +E VKVH + PV+ S P+ + +
Sbjct: 158 SSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKL 202
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 465 GGPSLSTPSEALVTRRVVRSMSRGCG 388
G P++S+ ++L+ R +V+ S+ CG
Sbjct: 406 GAPNVSSTCKSLIRRLLVKDESKRCG 431
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 168 RKRRSNRPGSIRRATGGSRAGPQPRAEH 251
R R PG GG AGP R H
Sbjct: 162 RTRGGGMPGGFANMFGGGGAGPHARRSH 189
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 271 ESEXPCSCSARG*GPAREPPVALRMEP 191
ES P + +R GP R PP ++ +P
Sbjct: 537 ESALPDARKSRARGPVRRPPTSVNTKP 563
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 317 EVLIENVKVHLVEDRPVRSILSPPPQPLDIDLTTL--RVTRASDGV 448
EVLI K+ +ED +R + + LD L T+ +TR S +
Sbjct: 273 EVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSI 318
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 373 RTDRAVFHEMYLHVFY 326
+T R +FH MY +V Y
Sbjct: 765 KTSRQIFHRMYAYVVY 780
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.7
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 6/144 (4%)
Frame = +1
Query: 4 PARLSRRKTRIKNKXSMRARAWTEPAIDEDSELKPRETPNVAARLTRTELSRTLNENGEA 183
P+RL +R+ +KN + R T + S ++ + RT+ + + + +
Sbjct: 337 PSRLEQREVNVKNSSAKIVRPGTSLGVRSPSRIQSTLSSRTTTGNVRTKAANIVRPS-SS 395
Query: 184 TGLAPYEELLEARVRDLSLALNMSTAARSLGVHRRRG----HRTAHA--SRSFNRKREGT 345
P + + +L + ++ + +H R HR AH+ S SF+ K T
Sbjct: 396 INRRPPSSINQRPPSNLRI---LAPSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLAT 452
Query: 346 SRGRPPGPFDTVAAAAAPGHRPDH 417
++ P V ++ H P +
Sbjct: 453 TKEIQNSP-TLVESSTVVHHDPSY 475
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = -1
Query: 382 RQYRTDRAVFHEMYLHVFY*NF*RHGRCDDLVFYELRESE 263
++Y T ++F+E+ + Y + + R ++V++ LR +
Sbjct: 854 KKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGK 893
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = -1
Query: 382 RQYRTDRAVFHEMYLHVFY*NF*RHGRCDDLVFYELRESE 263
++Y T ++F+E+ + Y + + R ++V++ LR +
Sbjct: 854 KKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGK 893
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,237
Number of Sequences: 5004
Number of extensions: 35552
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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