Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1656
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.34 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.7  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   9.7  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 214 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHXXVFLKDVSHSA--LRDLLQFMY 384
           D+  A +   + AHK  L+  S YF+  F K+ P++H      +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 242 NLPSAANVTSTRSPRDSRP*KPADI 168
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 139 SLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLV 264
           +L +NN H+N+ +G H  L+  +L + +   E  ++Q ++ +
Sbjct: 363 NLDYNNCHSNVWSGEHS-LTLSNLAEKSNLKEAEIIQGNRTI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,048
Number of Sequences: 5004
Number of extensions: 35578
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)