Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1656
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     103   9e-25
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          87   1e-19
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   5e-05
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  103 bits (248), Expect = 9e-25
 Identities = 46/100 (46%), Positives = 67/100 (67%)
 Frame = +1

Query: 118 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEM 297
           M   + F L WNN+ +++++ F  L    D VDVTLA +GR L+AH++VLS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 298 FKMNPTQHXXVFLKDVSHSALRDLLQFMYXGEVNV*ARRI 417
            K  P +H  + L+DV+ S L  L++F+Y GEVNV  R +
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSL 100


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 87.0 bits (206), Expect = 1e-19
 Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = +1

Query: 130 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMN 309
           + + L WNN+ +NM++ FH LL     VDVTLA     L+AHK+VLS CS YFQ++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 310 PTQHXXVFL-KDVSHSALRDLLQFMYXGEVNV 402
           P +H  + + +DV  + L+ +++F+Y GE++V
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDV 100


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 118 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 234
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 94  VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 225
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 95  FHVESSLSWRRTNNFHY 145
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 137 NCSSDAMIATTRRGTYPKLCTYNS 66
           NC  D +    +RGT  + C + +
Sbjct: 479 NCDIDCINRVVQRGTKMQFCIFRT 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,392
Number of Sequences: 438
Number of extensions: 2295
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)