Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1654
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   132   4e-31
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    130   2e-30
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   1.2  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  132 bits (319), Expect = 4e-31
 Identities = 71/136 (52%), Positives = 86/136 (63%)
 Frame = +2

Query: 413 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 592
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 593 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDXKCC*SQHTHQA*W*XXSVRT 772
           PLT+E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YD +        +      +   
Sbjct: 86  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 145

Query: 773 TRXKYDXLDVXNKIGI 820
               YD LDV NKIGI
Sbjct: 146 LTPDYDALDVANKIGI 161



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 723 KVNTLIRPDGXXKAYVPLAXNMTHWTLXTKLASI 824
           KVNTLIRPDG  KAYV L  +     +  K+  I
Sbjct: 129 KVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  130 bits (313), Expect = 2e-30
 Identities = 69/136 (50%), Positives = 86/136 (63%)
 Frame = +2

Query: 413 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 592
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 593 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDXKCC*SQHTHQA*W*XXSVRT 772
           PLT+E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YD +        +      +   
Sbjct: 76  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 135

Query: 773 TRXKYDXLDVXNKIGI 820
               YD LDV NKIGI
Sbjct: 136 LTPDYDALDVANKIGI 151



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 723 KVNTLIRPDGXXKAYVPLAXNMTHWTLXTKLASI 824
           KVNTLIRPDG  KAYV L  +     +  K+  I
Sbjct: 119 KVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 440 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 580
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,325
Number of Sequences: 37544
Number of extensions: 266442
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)