Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1654
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 126 2e-29
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 125 5e-29
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 31 1.4
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 31 1.4
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 31 1.4
Z66520-1|CAA91388.1| 655|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 4.3
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 5.7
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 5.7
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 29 5.7
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 5.7
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 28 7.5
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 10.0
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 126 bits (304), Expect = 2e-29
Identities = 66/136 (48%), Positives = 87/136 (63%)
Frame = +2
Query: 413 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 592
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 593 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDXKCC*SQHTHQA*W*XXSVRT 772
PLT+E+AMKKIE++NTLVFIV ANK+ IK AV KLY+ + +
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130
Query: 773 TRXKYDXLDVXNKIGI 820
YD LDV NKIG+
Sbjct: 131 LTADYDALDVANKIGV 146
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 125 bits (301), Expect = 5e-29
Identities = 66/137 (48%), Positives = 85/137 (62%)
Frame = +2
Query: 407 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 586
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 587 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDXKCC*SQHTHQA*W*XXSV 766
K P T+E++MKKIED+NTLVFIV ANKHHIK AV LY+ K +
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAY 127
Query: 767 RTTRXKYDXLDVXNKIG 817
YD LDV NKIG
Sbjct: 128 VRLASDYDALDVANKIG 144
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 437 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 613
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 614 MKKIEDNNTLVFIVH 658
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 437 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 613
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 614 MKKIEDNNTLVFIVH 658
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 437 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 613
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 614 MKKIEDNNTLVFIVH 658
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 437 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 613
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 614 MKKIEDNNTLVFIVH 658
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>Z66520-1|CAA91388.1| 655|Caenorhabditis elegans Hypothetical
protein F49E12.1 protein.
Length = 655
Score = 29.1 bits (62), Expect = 4.3
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = -2
Query: 829 QFIDANFVXNVQXVIFXASGTYAXXLPSGLMSVLTLATFXIIEFLDCSLDMVLVCTCVNN 650
+FID V N+ V+ Y + + S L T S+DM V
Sbjct: 449 RFIDG--VNNINHVLNNIDAIYRGMMTVPVRSPQRLTTSVTERLFGGSVDMAAV-NIQRG 505
Query: 649 KDQGVVIFNLLH--CCFRREREFNDVVGIHAISLRQRLPWVFRVP 521
+D G+ +N C R FND + ++RQR+ ++R P
Sbjct: 506 RDHGLRSYNDYRRFCNLRPITSFNDWPEVPDENVRQRIGQLYRTP 550
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 485 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 616
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 466 YSLPMFTFYNLPLSLKCFSNRFHYFF 389
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 539 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 703
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 539 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 703
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 79 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 131
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 539 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 703
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 699
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 539 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 703
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 491 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 670
F P E RHP R+ P+R + +K LT A+ + V +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247
Query: 671 KHHIKAAVKKL 703
+ HIK ++L
Sbjct: 248 QRHIKLFEEEL 258
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 404 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 541
P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,433
Number of Sequences: 27780
Number of extensions: 247312
Number of successful extensions: 810
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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