Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1652
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    30   0.44 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.77 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    28   1.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   1.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   2.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.2  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   7.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   7.2  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.5  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 27/92 (29%), Positives = 44/92 (47%)
 Frame = -1

Query: 581 VALVTGKGGAAVCSRTVVGLFP**LWL*VRYNVVRPEGQLYHVWKPFLAAAVLFLV*PIT 402
           V+ +TG      C   ++G+    LW+ +    + P+G L      FL    +F + P+ 
Sbjct: 11  VSNLTGSSSIETCGLLLIGIACNVLWVNMTARNILPKGNL-----GFLVEFFIFCLIPLF 65

Query: 401 DVSYVAYEIEVFPCCVIAAFHFGDRLDAFVSH 306
            V YV+ ++ VF  C IA+F     L +FV H
Sbjct: 66  -VIYVSSKVGVFTLC-IASF-----LPSFVLH 90


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 75  ELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKKAFRKLPNIESAMTALSNLK 242
           E++++++     GK Y Q+   ++V T + V    ++E K+AF    + E+   +L NL+
Sbjct: 74  EVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLR 133

Query: 243 GV 248
            V
Sbjct: 134 RV 135


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 567 SDESNLXPPATNGKLVTDCVNEDPRRRAQXTR 662
           SD  NL  P+TN      C+  +PR+  Q +R
Sbjct: 2   SDSVNLDEPSTNSTHFLQCLVTEPRKELQGSR 33


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 158 WRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHV 60
           WR+  Y I QL   F SGL   H  D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 240 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 282



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 318 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 360



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 396 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 438



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 474 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 516



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 552 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 594



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 582
           G+ T  +  +G TTL  T  HS     PTTV ++T   P+P T  T
Sbjct: 630 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 672


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 417 EEQNGCGKKWFPHMVELALWTHNIVSDLQPQLLGKEPNN 533
           + + G  + W  ++  L LW +  VSD + ++L  EP N
Sbjct: 681 QNETGLHRPWCLYVSTLILWAYGYVSDGRCEML--EPGN 717


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 516 GKEPNNRPAANGGSPLPSDESNLXPPATNGK 608
           GK+ +N P     +P+P   S+  PP+T G+
Sbjct: 259 GKDQSNTPVIKAPAPIPFSVSS-DPPSTMGR 288


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 528 WALSLITVVVSPIQCCASR 472
           W L+ + V VSPI C  SR
Sbjct: 921 WRLAAVLVAVSPILCLTSR 939


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 PHMVELALWTHNIVSDLQPQ 509
           PH  +L LW +N+V  + P+
Sbjct: 436 PHAGDLGLWFYNVVDGILPE 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,585
Number of Sequences: 5004
Number of extensions: 65404
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)