Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1652
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    84   1e-16
05_01_0518 + 4421314-4421346,4421427-4421767,4421960-4422619,442...    29   5.7  
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561...    28   7.5  
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   9.9  
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625...    28   9.9  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 1/180 (0%)
 Frame = +3

Query: 15  KMNFPXKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFR 194
           + + P  ++ R  +  +   ELV+L++WK +RGK+ P+L   +K      V   + KAF 
Sbjct: 42  RRDLPDLLRRRDPEPFLAKPELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFA 101

Query: 195 KLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTAREYL 374
            LP++  A+T L+ LKGVG            P++APFM+DE + A       +YT ++YL
Sbjct: 102 ALPDLRKAITELTVLKGVGPATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYL 160

Query: 375 NFVSHIRNVCDRLNEEQNGCGKKWFPHM-VELALWTHNIVSDLQPQLLGKEPNNRPAANG 551
            F   ++     L+      G++ F    VE ALW+  + S       G +  N+   +G
Sbjct: 161 AFAEKLQTKSKELSS-----GEEVFTTSDVERALWSSAVASKSLKAPPGNDLENKSKTHG 215


>05_01_0518 +
           4421314-4421346,4421427-4421767,4421960-4422619,
           4422992-4423116,4423337-4423692,4423768-4423852,
           4423917-4423954
          Length = 545

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 465 LALWTHNIVSDLQPQLLGKEPNNRPAANGGSPLPSDE 575
           L +W     S  + +L G E  + PA+ GG+ L S+E
Sbjct: 283 LPMWGGGASSSREEELAGMERRSSPASGGGALLASEE 319


>03_02_0099 -
           5614007-5614233,5614725-5614998,5615086-5616179,
           5616674-5616772,5617371-5617389
          Length = 570

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 495 DLQPQLLGKEPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
           +LQ    GK+P  +  +NG SP  S+   L P   N   V D   ED
Sbjct: 522 ELQQAEKGKKPTTKNKSNGKSP-GSNGKQLEPANGNSSAVDDEATED 567


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 283
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>06_03_1186 -
           28260487-28262112,28262205-28262345,28262429-28262573,
           28262964-28263067,28263324-28263456,28263904-28264013,
           28265144-28265167
          Length = 760

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 558 PLPSDESNLXPPATNGKLVTDCVNEDPRRRA 650
           P+P   + + PP    KL  + VN+DP  RA
Sbjct: 469 PVPERAAYVRPPYIKPKLNMETVNDDPAERA 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,364,893
Number of Sequences: 37544
Number of extensions: 499966
Number of successful extensions: 1289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)