Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1652
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   3.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   3.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   3.9  
U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha ...    29   5.1  
AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta...    29   5.1  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alph...    29   5.1  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.8  
L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical p...    28   6.8  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    28   8.9  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 7666 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 7703



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 8440 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 8477



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522   EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
             + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 10203 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 10240



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 6947 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 6984



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 9484 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 9521


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 7711 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 7748



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 8485 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 8522



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522   EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
             + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 10248 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 10285



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 6992 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 7029



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 9529 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 9566


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 7711 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 7748



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 8485 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 8522



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 522   EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
             + + RP +  GSPLP+D S       +G+ VTD +  D
Sbjct: 10248 DSSGRPISKDGSPLPTDASGNYILVPSGEGVTDSLPTD 10285



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 6992 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 7029



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 522  EPNNRPAANGGSPLPSDESNLXPPATNGKLVTDCVNED 635
            + N RP A  GSPLP+D +       +G+   D    D
Sbjct: 9529 DSNGRPLAKDGSPLPTDNNGRYVILPSGRYSGDTETTD 9566


>U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha
           family protein 2 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 636 DPHSRSPLRVYR-LSLGAXSCSRHWEGGSRRLQPDGCWALSLIT 508
           +PH+  PL V R LS G     +H +   R+++ D CWA+S +T
Sbjct: 251 NPHA--PLEVLRVLSKGLVKLVQHTD---RQVRQDACWAVSYLT 289


>AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta
           binding domain proteinprotein.
          Length = 531

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 636 DPHSRSPLRVYR-LSLGAXSCSRHWEGGSRRLQPDGCWALSLIT 508
           +PH+  PL V R LS G     +H +   R+++ D CWA+S +T
Sbjct: 251 NPHA--PLEVLRVLSKGLVKLVQHTD---RQVRQDACWAVSYLT 289


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 125 AVVVSDKSEHATSCDARDEKGLPQTAQY--RIRDDRSKQSQRRGNGHSISV 271
           A + SD++   ++  A++++     A+Y     +DRS  +QRR   HS+ V
Sbjct: 179 ASISSDQNGDGSNMTAKEKRAAADRARYLRMSEEDRSALNQRRREKHSVDV 229


>AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alpha 2
           protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 636 DPHSRSPLRVYR-LSLGAXSCSRHWEGGSRRLQPDGCWALSLIT 508
           +PH+  PL V R LS G     +H +   R+++ D CWA+S +T
Sbjct: 251 NPHA--PLEVLRVLSKGLVKLVQHTD---RQVRQDACWAVSYLT 289


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 30/121 (24%), Positives = 49/121 (40%)
 Frame = +2

Query: 68  PRRTCPAHEMETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRR 247
           PRR  P+    + +R ++ +V    KS  ++S  +   +     +  R    RS+   R 
Sbjct: 84  PRRRRPSTRRSSSRRSVVRSVSRGSKSRRSSSRGSVYGRTGRSRSSKR---SRSRSRPRT 140

Query: 248 GNGHSISVISCR*SRNSTVYG*RMRPGDPRNGRQRLHSKGIPQFRKPHTKRL**VKRGTK 427
            +G   S  S   SR S+    R R      GR+   +K  P  R+  ++    VKR   
Sbjct: 141 RSGSRSSSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRSRSQQKVKRSMS 200

Query: 428 R 430
           R
Sbjct: 201 R 201


>L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical
           protein ZK353.9 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/87 (26%), Positives = 35/87 (40%)
 Frame = +3

Query: 330 IPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWFPHMVELALWTHNIVSDLQPQ 509
           IPE+ G D    + ++++   +     LNE  +G GKK F  M +       + SD   +
Sbjct: 15  IPEVPGDDVYRYDMVSYIDMEK--VTTLNESVDGAGKKVFKVMEKRDDRLEYVESDCDHE 72

Query: 510 LLGKEPNNRPAANGGSPLPSDESNLXP 590
           LL   P        G  +  DE    P
Sbjct: 73  LLFNIPFTGHVRLTGLSIIGDEDGSHP 99


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 TPRAVMQETKKAFRKLPNIESAMTALSNLKG 245
           TP   +   +  FRK PN+E  MTA  + KG
Sbjct: 776 TPAGNVGMKRTVFRKDPNVEGIMTASGSRKG 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,515
Number of Sequences: 27780
Number of extensions: 392238
Number of successful extensions: 1268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)