Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1649
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.94 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   3.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   6.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   6.6  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   8.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.7  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   8.7  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +3

Query: 543 ERDGRTYLKLQQLKLDFSVKDIKMGVENLDNSNAVLQAALNLFIS 677
           ERD ++ L+ + L L +  +++++ +ENL +    L++AL   +S
Sbjct: 798 ERDEKSTLQQKCLNLQYEYENVRIELENLQSRALELESALEQSVS 842


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +3

Query: 471 SGGGEYWGEYHGVKAKVYFRGAPYERDGRTYLKLQQLKLDFSVKDI 608
           S G E    Y    +  Y RG  Y R  R+Y K +      SV  I
Sbjct: 621 SSGSETGSTYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPI 666


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  VVFDRDSDTAENECKHIRRKMFKTGSKRRRVSSKEF 190
           ++F  D  TAEN  K ++ +    GSK + ++  +F
Sbjct: 730 ILFASDGGTAENVAKRLQNRASARGSKCKIMAMDDF 765


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 323 VFEGCSVTVGTSS*G-YRQFVYHNGLSLFNAHLRSSSLQVVNEVVE 189
           +F+  S T+ T+S   +R FVY + L  FN       +Q++NE V+
Sbjct: 597 LFKRVSETLSTASLECFRIFVYRSALFAFNKSNVHEIIQLLNEPVK 642


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 189 FNNLVDYLKGGAPEMGIEEAEPIVIDELSIALGAGPD 299
           F  LV+Y  GG  ++ +E+   +  D  ++ L + PD
Sbjct: 9   FGELVEYFSGGTRQVDVEKL-GVCTDNSNVELSSCPD 44


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 532 PRKYTLALTPWYSPQYSPPPEART 461
           P +Y L     Y PQ+ PP ++RT
Sbjct: 693 PERYNLFKYRVYLPQFLPPTDSRT 716


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 252 AQPLQCPSQELLPSSS 205
           AQPL+ PSQ+LL S S
Sbjct: 353 AQPLELPSQQLLRSQS 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,868
Number of Sequences: 5004
Number of extensions: 59222
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)