Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1649
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 33 0.18
02_05_1206 + 34941293-34941562,34942052-34942153,34942249-349425... 31 1.3
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 30 2.3
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.0
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 3.0
11_01_0482 - 3714442-3715593 29 3.9
10_08_0563 - 18811520-18811804 29 3.9
06_03_0137 + 17066914-17067505,17067588-17067904 29 3.9
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 29 5.2
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151... 29 5.2
05_02_0165 - 7256178-7256444 29 5.2
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 28 6.9
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 6.9
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 9.1
07_03_0015 - 12447947-12448393 28 9.1
05_01_0358 + 2808627-2809847 28 9.1
01_06_0208 - 27540077-27540992,27541310-27541497 28 9.1
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/102 (26%), Positives = 44/102 (43%)
Frame = +2
Query: 284 RSWSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAG 463
RS SR +LQR RS+E + V P++ D R+ + +PL RS +
Sbjct: 523 RSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTM--DKGRSISRTSGRLPLRRSISRS 580
Query: 464 PSFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
P RR+ R P + + + R VR + ++ +R
Sbjct: 581 PDRPYRRIPSRSPRKNTRRSISRSPVRLSKRSISPVRGGRSR 622
>02_05_1206 +
34941293-34941562,34942052-34942153,34942249-34942521,
34942863-34942913
Length = 231
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 456 LLVRASGGGEYWGEYHGVKAKVYFRGAPYERD 551
+L +SGGGE E G+ K+YF PY D
Sbjct: 41 VLEGSSGGGEAEAEAAGITTKLYFGNLPYNCD 72
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 408 GPHISA-RARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYERDGRTYLKLQQLK 584
GP S R +S+G + V+ S +WG +G K++ + + G L +Q+L+
Sbjct: 542 GPEYSVDRQSIKSNGTQMHVKRSN---FWGRNNGRKSQ---QSELADSSGEEELAIQRLE 595
Query: 585 LDFSVKDIKMGVENLDNSNAVLQAAL 662
+ + D+++ + NA+LQA+L
Sbjct: 596 I--TKNDLQIRIAKEARGNAILQASL 619
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 496 SPQYSPPPEARTS------SRTPEERYRARALM*GPYS 401
SP+YSPPP R+ SR+P RY R + YS
Sbjct: 148 SPRYSPPPRGRSPYRSPSYSRSPSPRYARRRMRERSYS 185
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 297 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 446
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>11_01_0482 - 3714442-3715593
Length = 383
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 387 QFQLTLYGPHISARA-RYRSSGVLLLVRASGGGE 485
+ + T Y PH SA+A + R LLVR GGG+
Sbjct: 154 EVEKTAYRPHQSAKAHQLREGSTGLLVRRGGGGD 187
>10_08_0563 - 18811520-18811804
Length = 94
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 433 GTAPQEFCCWSELQAAASTGANTM-ASRPRYTSAALRTNA 549
GTAP E CC S L+A G A P Y S TNA
Sbjct: 42 GTAPSESCC-SNLRAQQKEGCLCQYAKDPTYASYVNNTNA 80
>06_03_0137 + 17066914-17067505,17067588-17067904
Length = 302
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 408 GPHISARARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYER-DGRTYLKLQ 575
G H +A AR R++ + +L RA GG G A+V G + R GR +L LQ
Sbjct: 97 GDHQAALARLRAAVLSVLARARRGGRRAGGGSSASARV-LTGTVFGRLRGRVHLALQ 152
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 290 WSRRLQSNLQRHPCVRSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSS 454
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>06_01_0195 +
1512978-1513207,1513938-1513945,1514040-1514197,
1514990-1515097
Length = 167
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 406 TDLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRYTSAALRTNATDEL 561
T +AP+ + P CW E+ A +GA + + ++ LR + D+L
Sbjct: 47 TSSGAAPSANSQPSRPACWEEVTDAGGSGARCLGR--SWKASELRLKSWDDL 96
>05_02_0165 - 7256178-7256444
Length = 88
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 460 WSELQAAASTGANTMASRPRYTSAALRTNATDE 558
W AAA+ G +AS+PR+ SA L A +
Sbjct: 5 WRVHAAAAAAGLRALASQPRHWSAGLAARAVGQ 37
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 392 PADAVRTSHQRPRSVPLLRSSAAGP 466
PA + R+S PR +PLL S A+GP
Sbjct: 58 PASSRRSSGPLPRPLPLLPSPASGP 82
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 285 GAGPDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYG 410
GAG T A+ S+ + N R D+ T+ +QL YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 505 PWYSPQYSPPPEARTSSRTPEERYRARA 422
P S SPPP R++SR+P R R+
Sbjct: 42 PKKSDSRSPPPRRRSTSRSPRPRRHGRS 69
>07_03_0015 - 12447947-12448393
Length = 148
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 468 ASGGGEYWGEYHGVKAKVYFRGAPYERDGR 557
A+GGG W + H + A RG+P E +GR
Sbjct: 113 AAGGGG-WRQCHRLPAGTRLRGSPRETEGR 141
>05_01_0358 + 2808627-2809847
Length = 406
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 424 PALGTAPQEFCCWSELQAAASTGANTMASRP 516
P G APQ F L AAAS G +AS+P
Sbjct: 138 PRAGFAPQIFLSGDPLAAAASPGWMAIASQP 168
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 606 CPLRRNLASAVAVSGKFVRRVRTERRGSIPWP*RHGIRPSTRRRLKLGPAAEL 448
CP R+ A + R RRG + W R G R + RRR + AE+
Sbjct: 92 CPARQQRCGGFATAA----RPGNPRRGDVSWDARDGARAARRRRQRRVGHAEV 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,796,488
Number of Sequences: 37544
Number of extensions: 426736
Number of successful extensions: 1471
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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