Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1649
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    33   1.4  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    33   1.4  
AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    33   1.4  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    33   1.4  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    33   1.4  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    33   1.4  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    33   1.4  
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        30   7.7  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    30   7.7  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    30   7.7  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    30   7.7  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    30   7.7  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     30   7.7  

>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 601 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 634


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 592 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 625


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 601 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 634


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 590 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 623


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 535 APRKYTLALTPWYSPQYSPPPEARTSSRTPEERYRA 428
           +PR+Y+  +   YSP  SPPP+ RT+S  P  + RA
Sbjct: 590 SPRRYSPPIQRRYSP--SPPPKRRTASPPPPPKRRA 623


>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 542 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 600 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 542 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 600 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 542 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 600 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 507 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 564

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 565 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 603


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 332 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 389

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 390 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 428


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 WSRRLQSNLQRHPCVRSIEHDH-H*RQVGSRDPSVPADAVRTSHQRPRSVPLLRSSAAGP 466
           WSR    N QR    RS      H R   +R  S      R    R R+    RS +  P
Sbjct: 590 WSR--SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 647

Query: 467 SFRRRRVLGRIPWRQGQGILPRRSVRTRRTNLPETATAEAR 589
           + RR R   R P R+G+      + R  RT  P    + +R
Sbjct: 648 TRRRSR--SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 686


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,341,279
Number of Sequences: 237096
Number of extensions: 2217827
Number of successful extensions: 13279
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13278
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)