Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1649
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    28   8.1  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    28   8.1  

>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 597 VKDIKMGVENLDNSNAVLQAAL-NLFISTNAQELLKEMKPELKR 725
           +K I+ GV+N D+SN  + A L N+F+     ++ K + P L++
Sbjct: 480 IKFIQDGVDNFDSSNTAMLAVLSNIFLDRTDTKMGKLIVPTLQQ 523


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 541 YGAPRKYTLA----LTPWYSPQYSPPPEARTSSRTPEE 440
           Y  P+KY +A     TP YS Q  P P A TSS   E+
Sbjct: 39  YPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQED 76


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 392 PADAVRTSHQRPRSVPLLRSSAAGPSFRRRRV--LGRIP 502
           P      +  RPR  P  R    GP FRRR V  LG  P
Sbjct: 29  PTSCATCTSNRPRCTPPRRIRQCGPKFRRRLVVLLGNSP 67


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 362 RQVGSRDPSVPADAVRTSHQRPRSVP 439
           RQV S  PS  A + RTSH RPR+ P
Sbjct: 619 RQVTSSRPSSSASS-RTSHSRPRTGP 643


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 362 RQVGSRDPSVPADAVRTSHQRPRSVP 439
           RQV S  PS  A + RTSH RPR+ P
Sbjct: 619 RQVTSSRPSSSASS-RTSHSRPRTGP 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,071
Number of Sequences: 27780
Number of extensions: 340716
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)