Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1648
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    34   0.070
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    32   0.37 
10_08_0007 + 14044844-14045767                                         30   1.1  
01_05_0657 + 24034198-24036306                                         30   1.5  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    27   8.0  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = -1

Query: 508 MKLQENLDYTKFSGVWYNVASYASDGRP---IYDCATLDFQEDNLGYTLRETYVNVDGGN 338
           MK+  NLD  ++ G WY +A + S  +P       AT     D     L ET+ +   G+
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 337 RTQKSYLARVDPTFD-AGNKAQFIV 266
               +Y  R DP  D A  K +F V
Sbjct: 61  IEGTAY--RADPVSDEAKLKVKFYV 83


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 316 PGKTSGFYYPRRHSRTSPVGCSQGCLPGSPGWHNRRLAVHRL 441
           P   +   +PR   R  P GCS G + G+    +RRL   RL
Sbjct: 179 PASAAAASHPRLRCRCEPRGCSSGRIEGAGAASDRRLRCRRL 220


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -1

Query: 277 QFIVSHEGGDKVLQFPFFILSTDYDEYAIAYTCKTLKKKTRTHYVFTWILTRTKN---KL 107
           Q IV++ GG+ +  F     +T          C+TL+K+ + + +F W    +++   K 
Sbjct: 233 QQIVNYPGGNILASFTTAATTTSVPVETALSACRTLQKEGKLYGIFIWAADHSRSQGFKY 292

Query: 106 QGDTQKKVETALSNY 62
           + ++Q  +  A  +Y
Sbjct: 293 ETESQALLANATISY 307


>01_05_0657 + 24034198-24036306
          Length = 702

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/48 (20%), Positives = 30/48 (62%)
 Frame = -1

Query: 193 IAYTCKTLKKKTRTHYVFTWILTRTKNKLQGDTQKKVETALSNYLELA 50
           ++++C T++  T TH +  W +  T  +++ + + ++++  +NY ++A
Sbjct: 505 LSWSCTTVR--TTTHTIIAWHIATTLCEVEDEERHRMDSTTTNYKDVA 550


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = +2

Query: 146 IMSPGFLLQRFTRVRYGVFIVISGQDEKRKLQNFITALVADNELSLVSSIKRGVDSCQVR 325
           +    F   R+  +++G FIV+ G      L  F T       +  V+ +   V SC   
Sbjct: 43  VKKSSFFPYRWVLIQFGAFIVLCGATHLINLWTFTTHTKTVAMVMTVAKVSTAVVSCATA 102

Query: 326 LL 331
           L+
Sbjct: 103 LM 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839,776
Number of Sequences: 37544
Number of extensions: 377436
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)