Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1648
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83236-10|CAB05780.2|  236|Caenorhabditis elegans Hypothetical p...    27   7.2  
U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    27   7.2  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    27   7.2  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    27   7.2  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    27   7.2  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    27   7.2  
Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z83236-10|CAB05780.2|  236|Caenorhabditis elegans Hypothetical
           protein K10H10.4 protein.
          Length = 236

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 283 CFQHQTWGRL-LPGKTSGFYYPRRHSRTSPVGCSQGCLPGSPGWHNRRLAVHR 438
           C Q Q + +   P   SG+   +     SP G S GC  GS G +  R   H+
Sbjct: 28  CNQPQLYSQCNCPSFCSGYMQQQPQYYQSPCGYSSGCSGGSGGGYYPRRRHHK 80


>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 394 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 215
           E+   +T++E +V+         SY   + PT +A +   F + H  GD     PF  LS
Sbjct: 425 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 483

Query: 214 T 212
           +
Sbjct: 484 S 484


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 394 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 215
           E+   +T++E +V+         SY   + PT +A +   F + H  GD     PF  LS
Sbjct: 354 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 412

Query: 214 T 212
           +
Sbjct: 413 S 413


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 134 PCENIMSPGFLLQRFTRVR 190
           PCEN   PGF LQR   VR
Sbjct: 574 PCENACCPGFTLQRGRCVR 592


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 394 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 215
           E+   +T++E +V+         SY   + PT +A +   F + H  GD     PF  LS
Sbjct: 354 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 412

Query: 214 T 212
           +
Sbjct: 413 S 413


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 394 EDNLGYTLRETYVNVDGGNRTQKSYLARVDPTFDAGNKAQFIVSHEGGDKVLQFPFFILS 215
           E+   +T++E +V+         SY   + PT +A +   F + H  GD     PF  LS
Sbjct: 425 EERFSHTMKEFFVDCAWTAPPNDSYACPM-PTSNATSSDSFDIRHWKGDNYDYSPFVTLS 483

Query: 214 T 212
           +
Sbjct: 484 S 484


>Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical
           protein C07B5.6 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 532 TLPGECPN-MKLQENLDYTKFSGVWYNVASYASDGRPIYDCATLDFQEDNLGYTLRETYV 356
           TLP    N +   E L++ + +   Y  +SY S G P++    L  Q + +  ++ E   
Sbjct: 23  TLPESAENDVSHSEGLEFGEMNSAEYTSSSYISFGEPVFTTNILVNQPNCIDQSVMEASQ 82

Query: 355 NVDGGN 338
           N +  N
Sbjct: 83  NFNTFN 88


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 187 YTCKTLKKKTRTHYVFTWILTRTKNK 110
           YTC   ++K   H  + W LTR + K
Sbjct: 29  YTCSAPQRKAARHLRWDWTLTRHRRK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,773
Number of Sequences: 27780
Number of extensions: 317460
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)