Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1647
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    30   0.33 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.2  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   7.2  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.5  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 343 SPIKCSSGSSL-ETRSLKATLKLLSIISSRSTPKR*TLRNLCIPIFQRK---PANXPAPA 510
           +P K ++ + L E +SLK T K LS ISS S  K     N   P+F  K    AN P P 
Sbjct: 150 NPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKK---ANNSSKPLFSGKLTFKANIPVPT 206

Query: 511 **PNTENIKTEKI 549
               TEN  T  +
Sbjct: 207 SEVVTENNVTRNV 219


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
 Frame = +3

Query: 111 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGE--ISRDGS 272
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   + +  
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQV 659

Query: 273 VQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEID 449
             +L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ + 
Sbjct: 660 TWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLS 719

Query: 450 SSKLV 464
           SS+ V
Sbjct: 720 SSQSV 724


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 384  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 485
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 21  NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 179
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 523 TENIKTEKILEALRGXN*IVT 585
           +E++K ++ LEA+ G N IVT
Sbjct: 314 SEDVKDQRFLEAINGINSIVT 334


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = +3

Query: 378 NKKLEGDAKTAVDNFIKEHSKEIDSSKLV------HTD-FSEEACKLXSSSVITE 521
           NKK EGD K  +D F  E +  I   K++      H D   EE C+  +S    E
Sbjct: 80  NKKFEGDIKNCLDGF-NELNDPIVQEKILRAFEQGHVDEEDEERCRKMASDASEE 133


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 390 EGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKLXSSSVITEHGKH*D 539
           E DA   VD   +    E+DS +    DF + +  + +   IT  G   D
Sbjct: 231 EADAFNFVDVMSQASGTEVDSERFPSVDFEDPSLLMENQQNITGTGSFAD 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,697
Number of Sequences: 5004
Number of extensions: 46802
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)