Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1639
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    28   1.4  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   3.2  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   4.2  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.6  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   9.8  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 540 NKLKTNKRNPSDGGHGKGKTKLLFL-FNSEHFHIDLPFK 653
           N LK++ +  ++ G G+GKTK+ ++ +NS       PFK
Sbjct: 410 NSLKSSSKKSANTGSGQGKTKVEYVSYNSVDKGNSSPFK 448


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 448 YIPKFNTRKRFISRLADPADFVVPQSQLLYKINLKQTKGI 567
           Y P F+ R   I  +++P D  +   + +++ NL   KGI
Sbjct: 127 YQPIFSRRAEIIKGVSEPVDDELDHEEEIFQNNLPDPKGI 166


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 606 IILFFLCRVPRRTDSFCLF 550
           +++FFL  VP+ T SFC+F
Sbjct: 260 LLIFFLNLVPKPTVSFCVF 278


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 249 AGSSPGFRRQILSPHTYSPFLNICSIPP 166
           AG+S G R      H Y+PF+  C++ P
Sbjct: 233 AGASLGMRLHSGPSHPYAPFILTCTLNP 260


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 200 YVC-GDKICRLKPGEEPAGCNGICQFPIDPMDYDG 301
           Y C  D++C +  G +   CNG C  P   +  DG
Sbjct: 891 YYCDNDQLCPIIDGVDYLSCNGACYNPSQYVCSDG 925


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 410 KIDFIL*YVHIMYTFLSLIRENDLFPD*LTR 502
           ++D I  YVH M+T L++I  +    + LTR
Sbjct: 773 RLDLIQPYVHSMFTLLNMITADPECSESLTR 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,983
Number of Sequences: 5004
Number of extensions: 70949
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)