Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1639
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1790 - 29536497-29536625,29536734-29536848,29537357-295375...    36   0.051
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122     30   1.9  
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298...    30   2.5  
05_04_0289 - 19853556-19853844,19853942-19854093,19854104-198543...    29   3.4  
10_08_0430 - 17867138-17867377                                         29   4.4  
10_08_0479 - 18199310-18199348,18199938-18200255                       29   5.9  
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781...    28   7.8  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    28   7.8  

>07_03_1790 -
           29536497-29536625,29536734-29536848,29537357-29537508,
           29537589-29537737,29538936-29539098,29539575-29539686,
           29539791-29540152
          Length = 393

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 329 LSVRTASVAARRNPLGRWGTGRCRCSPRAPLP----ASDDRSYRHTHI 198
           L +R++  +    P    GTG C   P APLP    ASDD +Y H HI
Sbjct: 52  LLLRSSFASVSPGPAPGSGTGECPPPPPAPLPPDELASDDDAYYHEHI 99


>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
          Length = 370

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 676 YLWKSRESLKGRSI*KCSELNKNNNFVFPLP 584
           Y WK R     +++   S + +N+NFV PLP
Sbjct: 210 YWWKMRSDPTWKNLSTASTIEQNDNFVVPLP 240


>03_02_0658 +
           10228794-10228943,10229042-10229105,10229510-10229805,
           10230689-10230904,10231409-10231549,10232407-10232499,
           10234010-10234108,10234198-10234227,10234274-10234360,
           10234636-10234689,10234758-10234835,10235128-10235202,
           10236265-10236356,10236433-10236490,10236590-10236664,
           10236966-10237013,10239003-10239065,10239167-10239258,
           10239693-10239761,10239867-10239930,10240007-10240072,
           10240170-10240271
          Length = 703

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 317 TASVAARRNPLGRWGTGRCRCSPRAPLPASDDRSYRHTHIRLSLTYVLYRRVCEDSVFL* 138
           T S   RRN L +   G+C+      +P  +    R T+   S T +    +C D   L 
Sbjct: 417 TNSTRNRRNMLMKMAEGKCKSPKLIIVPIMNINRKRRTYKAYSCTIIFLETICNDQNVLE 476

Query: 137 R 135
           R
Sbjct: 477 R 477


>05_04_0289 -
           19853556-19853844,19853942-19854093,19854104-19854349,
           19854464-19854833,19854941-19855233
          Length = 449

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 178 TYVKERRICVWR*--DLSSEAGRGARGLQRHL--PVPHRPNGLRRAAT 309
           T+  E  + VW+   D++  A   A  L+ HL  P+PHR  G++   T
Sbjct: 250 TFAMEHSMSVWKIGFDMNLLAAAYAVSLENHLTHPLPHRSGGIKHGVT 297


>10_08_0430 - 17867138-17867377
          Length = 79

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +2

Query: 5   AVLCVILWLGASVPINMERRLVNRPPR-----DEVMGLSRPKRHQINAPVKGRQSPHRR 166
           AV+CV  WL A   + + RR    PP      +EV+G    K ++    +KG     RR
Sbjct: 21  AVVCVCAWLAAVYGLQLNRRRAKPPPAADGGGEEVVGDVNSKDYKKLVVLKGLLQRDRR 79


>10_08_0479 - 18199310-18199348,18199938-18200255
          Length = 118

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 74  RPPRDEVMGLSRPKRHQ----INAPVKGRQSPHRRGG 172
           +PPR +   LSR + H     +   V G + PH+RGG
Sbjct: 36  KPPRHQSACLSRRRLHHAAHVVRTGVSGSRLPHKRGG 72


>09_04_0643 +
           19176561-19176644,19176761-19176902,19178084-19178172,
           19178470-19179195
          Length = 346

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 329 LSVRTASVAARRNPLGRWGTGRCRCSPRAPLPASDD 222
           L  RT   AA R+P GR       C+P AP P   D
Sbjct: 216 LDYRTPDGAALRSPSGRRYDAVAHCAPPAPWPVFRD 251


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 34  SFGPHQHGAEAGQSSATGRGDGSISAETTS 123
           SFG +     +GQS ATGR +G  SA   S
Sbjct: 299 SFGANSSVFSSGQSGATGRNNGGNSASNFS 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,950,196
Number of Sequences: 37544
Number of extensions: 491241
Number of successful extensions: 1412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)