Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1639
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-6|CAE17738.1|  108|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z48045-6|CAE17738.1|  108|Caenorhabditis elegans Hypothetical
           protein C41C4.9 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 260 GICQFPIDPMDYDGQPQRRFGQTINAKERF**YPFY 367
           G  QFP+DP ++  Q Q  F Q  N       +PF+
Sbjct: 54  GALQFPLDPFNFLAQLQSMFSQLPNIFSSVFKFPFF 89


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +1

Query: 460 FNTRKRFISRLADPADFVVPQSQL-LYKINLKQTKGIRPT-------GDTAKEKQNYYFY 615
           F +   F  R + P   +   S+L L+   L+Q + ++          DT  EK  YY  
Sbjct: 417 FQSHVEFSCRRSGPIVMITNSSKLYLHHQMLRQLRKVKAVLRHFDSKSDTYSEKTTYY-- 474

Query: 616 LIPSIFILIYLLNFLWTSTNN 678
           LI   F++   + F+W    N
Sbjct: 475 LIGGCFVIAIFMEFIWFFRKN 495


>AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39A1A.14 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 588 CRVPRRTDSFCLF*VYFIQKLRLRHYE 508
           CR+PR  D FC   V  + KL +R  E
Sbjct: 109 CRIPRTFDRFCGLMVQLLHKLSIRAAE 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,645,400
Number of Sequences: 27780
Number of extensions: 415039
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)