Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1639
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.48 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 613 YLIPSIFILIYLLNFLWTSTNNSRPKLAKSV 705
           Y+IP++ +++  L  LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 SHRGGSDRQSTQKNGFNDIHFIHVTALALETI 398
           ++RGG    S   +G  D+ F+ +TAL+ E +
Sbjct: 572 TYRGGKGALSCLLDGKGDVAFVPLTALSEEGV 603


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 SHRGGSDRQSTQKNGFNDIHFIHVTALALETI 398
           ++RGG    S   +G  D+ F+ +TAL+ E +
Sbjct: 572 TYRGGKGALSCLLDGKGDVAFVPLTALSEEGV 603


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 SHRGGSDRQSTQKNGFNDIHFIHVTALALETI 398
           ++RGG    S   +G  D+ F+ +TAL+ E +
Sbjct: 572 TYRGGKGALSCLLDGKGDVAFVPLTALSEEGV 603


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 206 CGDKICRLKPGEEPAGCNGICQFPIDPMDYDGQPQRRFG 322
           CGD   + K G   +   GI Q    P +  G PQ   G
Sbjct: 39  CGDSCHKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLG 77


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 136 RQRKTESSQTRRYRTYVKERRI 201
           R+R  E S+ +R R   KER+I
Sbjct: 60  RERSKERSRDKRERERSKERKI 81


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 136 RQRKTESSQTRRYRTYVKERRI 201
           R+R  E S+ +R R   KER+I
Sbjct: 60  RERSKERSRDKRERERSKERKI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,419
Number of Sequences: 438
Number of extensions: 5812
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)