Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1638
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 411 e-116
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 243 2e-65
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 229 5e-61
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 161 8e-41
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 97 3e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 7e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 79 1e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 2e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 69 8e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.25
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.44
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.58
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 3.1
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 3.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.1
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 7.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 9.5
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.5
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 9.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 411 bits (1012), Expect = e-116
Identities = 193/209 (92%), Positives = 200/209 (95%)
Frame = +1
Query: 31 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 210
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 211 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 390
TQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLD
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179
Query: 391 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 570
LAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKS
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKS 239
Query: 571 YELPDGQVITIGNERFRCPEALFQPSFLG 657
YELPDGQVITIGNERFR PEALFQPS LG
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALG 268
Score = 52.4 bits (120), Expect = 7e-08
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +2
Query: 644 PRSWGMEACGIHETTYNXIMKCDVDIP*GLVRQHRIGPGGTTMYP 778
P + G+E GIHE TYN IMKCDVDI L + + GGTTMYP
Sbjct: 264 PSALGLENAGIHEATYNSIMKCDVDIRKDLY-GNVVMSGGTTMYP 307
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 243 bits (595), Expect = 2e-65
Identities = 105/207 (50%), Positives = 153/207 (73%)
Frame = +1
Query: 37 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 216
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 217 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 396
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 397 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 576
GRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYT 241
Query: 577 LPDGQVITIGNERFRCPEALFQPSFLG 657
LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 229 bits (559), Expect = 5e-61
Identities = 103/208 (49%), Positives = 145/208 (69%), Gaps = 1/208 (0%)
Frame = +1
Query: 37 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 213
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 214 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 393
+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEI 185
Query: 394 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 573
GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTY 245
Query: 574 ELPDGQVITIGNERFRCPEALFQPSFLG 657
+LPD Q IT+G E F PE LF P +G
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMG 273
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 641 NPRSWGMEACGIHETTYNXIMKCDVDIP*GLVRQHRIGPGGTTMYPWNRR 790
NP G EA G+H + I+ D+D+ L + G T + + R
Sbjct: 268 NPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 161 bits (392), Expect = 8e-41
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Frame = +1
Query: 49 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 228
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 229 TFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILR 384
+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKT 208
Query: 385 LDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA--TAASS 552
+ LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 209 MPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPD 263
Query: 553 SSLEKSYELPDGQ--VITIGNERFRCPEALFQP 645
L+ + E G I +G ERF PE F P
Sbjct: 264 RYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 96.7 bits (230), Expect = 3e-21
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Frame = +1
Query: 61 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 240
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 241 PAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 414
P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G +
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
Query: 415 YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 567
YL+K+ + SF + C+V+ D+ ++A A LE+
Sbjct: 205 YLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 89.0 bits (211), Expect = 7e-19
Identities = 44/134 (32%), Positives = 69/134 (51%)
Frame = +1
Query: 46 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 225
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 226 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 405
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 406 LTDYLMKILTERGY 447
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 593 SSPSE-TKDSVAQRLSSNPRSWGMEACGIHETTYNXIMKCDVDIP*GLVRQHRIGPGGTT 769
S P E T+++ + S+ + GI + N I +CDVDI L+ + I GGT+
Sbjct: 299 SKPIEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLL-NNVIVCGGTS 357
Query: 770 M 772
+
Sbjct: 358 L 358
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 78.6 bits (185), Expect = 1e-15
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Frame = +1
Query: 67 EHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNT 240
E G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 241 PAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPHAI 378
A A L + G T +V+DSG +H +P+ + A+
Sbjct: 124 DAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAV 183
Query: 379 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS-- 552
R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M
Sbjct: 184 KRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVSQNFKEDMEICHEKPR 241
Query: 553 SSLEKSYELPD------------------GQVITIGNERFRCPEALFQPS 648
S LE Y LPD QV+ + NERF PE LF PS
Sbjct: 242 SKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPS 291
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/128 (25%), Positives = 66/128 (51%)
Frame = +1
Query: 70 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 249
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 250 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 429
Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG L + ++
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQL 193
Query: 430 LTERGYSF 453
F
Sbjct: 194 FNTMNIEF 201
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +1
Query: 448 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 627
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 628 EALFQPSF 651
E LF PSF
Sbjct: 300 EILFNPSF 307
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 671 GIHETTYNXIMKCDVDIP*GLVRQHRIGPGGTTMYP 778
G+HE Y I+ CD ++ L+ + + GGT++ P
Sbjct: 323 GLHELVYQSILACDSELRSPLL-NNIVVTGGTSLIP 357
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 68.9 bits (161), Expect = 8e-13
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +1
Query: 61 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 228
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 229 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 408
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 409 TDYLMKILTERGYSFTTTAEREIVRDIKE 495
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +1
Query: 52 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 195
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 196 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 375
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 376 ILRLDLAGRDLTDYLMKILTERGYSF 453
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 121 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 264
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 245 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 379
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 242 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 379
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 242 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 379
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 242 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 379
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 476 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 646
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.44
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Frame = +2
Query: 242 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTRDTHSPTPSCVWTWPVVXX 409
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 410 XXXXXXXXXXXXXXXXXXXXGKSFVTSRR-SCATSLSTSSRRWPPLHPAAPSRSLTNFPT 586
G + SR+ S + S++++ PP+ A PS +L +
Sbjct: 492 AELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVE-APPSNNLMD--A 548
Query: 587 VRSSPSETKDSVAQ 628
+ S+ ++ K VAQ
Sbjct: 549 LASALNQRKTKVAQ 562
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.58
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 221 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 379
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 221 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 379
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 233 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 379
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 266 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 370
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 497 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 652
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 266 PCSRCTRPVVPPVSCWTPATVSPTPCPST 352
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 512 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSET 610
LS + WP L HP P R P++ + P +T
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDT 141
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 105 LLHVIPVSDDSVFDGVFEGQDTSFAXVPH 19
LL + +D V + +F+G D F +PH
Sbjct: 175 LLQCKVIPEDQVHENMFKGADVPFKRIPH 203
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 242 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 349
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 545 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPRSWGMEACGIHETTYN 694
HPA+ SLTN ++ + P+ D + S +PR E G + +T N
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPRKQKFEQ-GKNPSTTN 181
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 163 LLTEAPLNPKANREKMTQIMFETFN 237
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 536 PPLHPAA-PSRSLTNFPTVRSSPSET 610
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 248 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 391
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 539 PLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWGMEACG 673
P+ ++ + S+T PT SS + T + + ++ +S GM+ CG
Sbjct: 840 PVQSSSTTSSITPTPTTTSSITPTPTTTST--TTTAQSTGMQLCG 882
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 FEGQDTSFAXVPHLLH 10
FEG +T FA + HLLH
Sbjct: 544 FEGLETFFAYIVHLLH 559
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 609 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 484
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -3
Query: 396 GQVQTQDGVGECVSLVDGHGVGDTVAGVQHDTGGTTGR 283
GQ + G G G G GDTV GG GR
Sbjct: 122 GQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 659 YPKNEGWKRASGQ 621
YP N+GWK+A G+
Sbjct: 309 YPVNQGWKQAMGR 321
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 177 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 326
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 260 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWTWPV 400
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,503
Number of Sequences: 5004
Number of extensions: 78691
Number of successful extensions: 328
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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