Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1638
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              92   6e-21
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 91.9 bits (218), Expect = 6e-21
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +1

Query: 529 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 657
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 43



 Score = 61.3 bits (142), Expect = 1e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 644 PRSWGMEACGIHETTYNXIMKCDVDIP*GLVRQHRIGPGGTTMYP 778
           P   GMEACGIHETTYN IMKCDVDI   L   + +  GGTTMYP
Sbjct: 39  PSFLGMEACGIHETTYNSIMKCDVDIRKDLY-ANTVLSGGTTMYP 82


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +3

Query: 363 TP-PRHPASGLGRS*PHRLPHEDPHRARLLVHYH 461
           TP P H   G G S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 133  LRVAPEEHPVLLTEAPLNPKANREKM 210
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,378
Number of Sequences: 438
Number of extensions: 5879
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)