Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1635
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    31   0.98 
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577...    30   1.7  
09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260     30   2.3  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    29   3.9  
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380           29   5.2  
02_03_0243 - 16791789-16793306                                         29   5.2  
04_04_0138 + 23067885-23068245,23068393-23068634                       28   9.1  

>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 309 PATKPEVSYSGQTTLPGGQYILNSRIGPGGGSVLRQPSF 193
           P T+ EV   G   L G + +LN+R+ P  GS + QP F
Sbjct: 212 PVTQAEVQQIGNNLLQGMERLLNARL-PAAGSGVVQPPF 249


>04_03_0847 -
           20254736-20254933,20256127-20256201,20257538-20257717,
           20257802-20257869,20258563-20259125,20259198-20259235
          Length = 373

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +2

Query: 167 IPRTIKDAENDGWRRTEPPPGPILELRMYCPPGRVVCPLYDTSGFV-------AGLQIAI 325
           I R + +  ND      PPP P        PP RVV  + D  G++       A LQ A+
Sbjct: 11  IGRNLWETGNDAGGEMSPPPPP--------PPPRVVICVGDVHGYISKLESLWANLQSAL 62

Query: 326 PVDEFESSVI 355
           P D F ++++
Sbjct: 63  PPDAFATALV 72


>09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260
          Length = 229

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 309 PATKPEVSYSGQTTLPGGQYILNSRIGPGGGSVLRQP 199
           P T+ EV   G   L   +++LN+R+   GG  ++ P
Sbjct: 19  PITRAEVQQIGNNLLQAMEHLLNARLPAAGGGAVQPP 55


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 378 NGTQHPRKENPLGTIGQPLN 437
           +GT+HPRKE+ + +IG  +N
Sbjct: 568 SGTEHPRKEHDMSSIGSGVN 587


>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
          Length = 356

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 359 PEKKFVK--WYAAPAEGEPSRDYW-TATQYYVSEESLKAGAGPQI 484
           P   F++  ++  P +GE   DYW  A Q     +  +AG GP +
Sbjct: 272 PRTAFIEDFFFTDPPQGEVGMDYWHAAPQVTQPTQETEAGQGPDV 316


>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 224 AVVQSCANRHFLHPLWCAVCCRSIRCPPGRLTSRISPGDR 105
           A     ++ HFLH  W A+C  +   PP  +  R S  +R
Sbjct: 177 AACDGASSTHFLHT-WAAICAGAAATPPPPVIDRTSIRER 215


>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/90 (25%), Positives = 32/90 (35%)
 Frame = +2

Query: 209 RTEPPPGPILELRMYCPPGRVVCPLYDTSGFVAGLQIAIPVDEFESSVIKPEKKFVKWYA 388
           RT     P+L  R+  PP    CP +D  G      +++P     S+            A
Sbjct: 98  RTRAVQLPLL-CRLDLPPAATACPGFDLGGAAPSPPVSVPRSTPNSTAPSTPTPVTVTRA 156

Query: 389 APAEGEPSRDYWTATQYYVSEESLKAGAGP 478
            P +  PS    + T  Y S   L A   P
Sbjct: 157 PPQQMTPSPKTSSQTPEYSSGLKLIADCVP 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,801,375
Number of Sequences: 37544
Number of extensions: 511352
Number of successful extensions: 1312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)