Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1635
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000488-1|AAH00488.1|  669|Homo sapiens RBM14 protein protein.        30   7.7  
AK222830-1|BAD96550.1|  669|Homo sapiens RNA binding motif prote...    30   7.7  
AF315632-1|AAK77961.1|  669|Homo sapiens coactivator activator p...    30   7.7  
AF080561-1|AAC64058.1|  669|Homo sapiens SYT interacting protein...    30   7.7  
AB209007-1|BAD92244.1|  552|Homo sapiens RNA binding motif prote...    30   7.7  

>BC000488-1|AAH00488.1|  669|Homo sapiens RBM14 protein protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 405 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSR 235
           S S GAAY      S   G  T+   +       +P+      Y GQ   P  Q    S 
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301

Query: 234 IGPGGGSVLRQPSFSA 187
           +GP GG+   QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314


>AK222830-1|BAD96550.1|  669|Homo sapiens RNA binding motif protein
           14 variant protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 405 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSR 235
           S S GAAY      S   G  T+   +       +P+      Y GQ   P  Q    S 
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301

Query: 234 IGPGGGSVLRQPSFSA 187
           +GP GG+   QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314


>AF315632-1|AAK77961.1|  669|Homo sapiens coactivator activator
           protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 405 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSR 235
           S S GAAY      S   G  T+   +       +P+      Y GQ   P  Q    S 
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301

Query: 234 IGPGGGSVLRQPSFSA 187
           +GP GG+   QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314


>AF080561-1|AAC64058.1|  669|Homo sapiens SYT interacting protein
           SIP protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 405 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSR 235
           S S GAAY      S   G  T+   +       +P+      Y GQ   P  Q    S 
Sbjct: 242 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 301

Query: 234 IGPGGGSVLRQPSFSA 187
           +GP GG+   QPS SA
Sbjct: 302 LGPYGGA---QPSASA 314


>AB209007-1|BAD92244.1|  552|Homo sapiens RNA binding motif protein
           14 variant protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = -1

Query: 405 SPSAGAAYHFTNFFS---GLITEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSR 235
           S S GAAY      S   G  T+   +       +P+      Y GQ   P  Q    S 
Sbjct: 176 SVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASS 235

Query: 234 IGPGGGSVLRQPSFSA 187
           +GP GG+   QPS SA
Sbjct: 236 LGPYGGA---QPSASA 248


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,269,129
Number of Sequences: 237096
Number of extensions: 2783797
Number of successful extensions: 5942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5942
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)