Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1635
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   3.5  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   6.2  

>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 176 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 69
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 176 CAVC-CRSIRCPPGRLTSRISPGDRRTGIRTNKS*VQ 69
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 703 FXGXXLMQTPSSI-SSQSIFLVML***CVPILGDANSVF*RKCCLVQLPVGIRXKVSVWS 527
           F    +++  S+I SS    +++L   C+  + ++  VF   C L+ + +G    +S+W 
Sbjct: 666 FYSDQMLELQSTILSSLGTAIILLSAICIMFIAESYIVFWVVCTLISMDIGTAGLLSLWG 725

Query: 526 GD 521
            D
Sbjct: 726 AD 727


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 81  LIRTDSSTTVSG*NSAGQTPWRTSNTSTAYRAP*RMQKMTVGAG 212
           L++  SS+T    N  G TP R    + AY    R   M +G G
Sbjct: 340 LVKKSSSSTSISLNGIGSTPTRQFEITQAYGGTIRGPPMAIGGG 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,578
Number of Sequences: 27780
Number of extensions: 417542
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)