Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1633
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   1.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.1  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   7.2  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   7.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/69 (27%), Positives = 38/69 (55%)
 Frame = +2

Query: 398 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 577
           +SSSS +P  + ++   S  +    S+  +   +SS+    +  TSS ST+++S S  + 
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352

Query: 578 ATYWRTTTS 604
           +++  TT+S
Sbjct: 353 SSFSSTTSS 361


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 88  ILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQK 189
           I+E+T +++S+  KL   +ESRD    + S++++
Sbjct: 31  IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
 Frame = +1

Query: 109 LYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLIT--AVTSLVQFL 282
           L ++   + P  +S+       S V+K   N K      L  +Y   ++     SLV++L
Sbjct: 529 LLNSFSPISPFSKSKSHNHHPSSQVEKSTSNSK-GSMLPLDTLYNNKLSFRLDESLVRYL 587

Query: 283 RTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 414
           R +L +  + + +PDF      F    S+     S   +  WSF + +
Sbjct: 588 RFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 31  LPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLLPTQESRDLAE----AIHSYVQKKLR 198
           L  L +  EK+ D    EKI +V+QIL S +Q L+      +  +     +H+  +K LR
Sbjct: 370 LHALCSSLEKFTDFQGSEKIQKVSQILSSKLQILIDEHNETNSPKIDDTVVHACSEKLLR 429


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 436 ILALLRAYRPRSINPLDEVPSKLRAVVV 519
           I  +L +Y P+ INP +E+P   R + +
Sbjct: 9   IYKVLYSYEPQEINPGEEIPENEREISI 36


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 261 NSCDQLLIDHAELLLIIAF-LVTEFLLNVGVDCFGQISAFL-RWQQFLDIAVQYLGHF*N 88
           N C+ LL    ++L  + F +V   LLN+ +  F         W + LD+   Y  H  +
Sbjct: 228 NECEPLL--KKDILSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRILDVHTSYWKHMFS 285

Query: 87  LLGNYQI 67
           L G +QI
Sbjct: 286 LFG-FQI 291


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 55  EKWNDLVVPEKI--LEVTQILYSNIQKLLPTQESRDLAEAIHSYV 183
           EK  ++ +P+K   L++ ++L S +   +   +  DLA   H+YV
Sbjct: 439 EKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYV 483


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 235 VYQKLITAVTSLVQFLRTQLNEFGIINTTPD 327
           +Y+    ++TSL+Q   +QL+++ +I   PD
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPD 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,784
Number of Sequences: 5004
Number of extensions: 61286
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)