Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1633
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 38 0.007
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178... 30 1.9
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.9
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 5.7
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 5.7
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 7.5
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 28 9.9
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 9.9
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 28 9.9
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 9.9
02_05_0664 + 30717551-30719491 28 9.9
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 9.9
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -3
Query: 438 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 283
DV ++GV L EE + LS+ + +W+SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>06_02_0152 -
12316242-12316248,12316634-12316800,12317689-12317800,
12317930-12317999,12318535-12318535,12318791-12319144
Length = 236
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 560 PSQETVATYWRTTTSIENFTLLIQLQNGKPKALI 661
PS T WRT S++N + +L++G P AL+
Sbjct: 65 PSTPTPVAVWRTVASVDNASPPSRLRSGTPTALM 98
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 406 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 516
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 19 QISALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLL 135
Q ++ P L++ +EK+NDL EK+ E+ ++ ++ + L
Sbjct: 794 QPASFPSLASFEEKFNDLTTTEKVEELKNLVAPHMLRRL 832
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 343 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 447
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 406 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 504
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 186 EETP*PEMR**EGAPRGLSEVDHSCYIARPVLEDSAE 296
EE PE+R E A + +H+C + RP+ D E
Sbjct: 602 EENEEPEVRITEAAEKSAVTGEHTCMVLRPLNSDDIE 638
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 406 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 522
++L +GDF + LL+ Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.9 bits (59), Expect = 9.9
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Frame = +1
Query: 442 ALLRAYRPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYV--LAHD-----H 600
ALL+ YR ++ P + K + G + D L F G V + +D H
Sbjct: 105 ALLKGYRFVAVMPAEYSLDKQMLLTYLGAEVILTDPT-LGFQGQLDKVEQIKNDMPNVHH 163
Query: 601 VDRKLHAANPTSKRKTQGSYFWEDKSGAI-IELKENGQGYS*TG 729
+D+ +AANP + G W+D +G + I + +G G + +G
Sbjct: 164 LDQFKNAANPEAHFVWTGPEIWKDTAGKVDIFVAGSGTGGTISG 207
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 549 TVEREDVLTVHNNSAELRRHFV*WVDATRSVGSEKGQDVREITGVQLLEEAPRCLSSKRR 370
T R++ L S +++R F + ++G ++ VQLLE A C S R
Sbjct: 727 TGHRDEALAKAEQSIKIQRSFEAFFLKAYALGDSSLDTESSLSVVQLLEHANSCASDNLR 786
Query: 369 SG 364
G
Sbjct: 787 KG 788
>02_05_0664 + 30717551-30719491
Length = 646
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 91 LEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSL 270
++ Q ++N+ KL +Q ++ IH + K + E EL +Y K +
Sbjct: 459 IKYNQHNFANLLKLCGSQRYKEYGRQIHGHAIKTINKMNVVLETELIDMYAKCGCIEVAR 518
Query: 271 VQFLRTQLNEFGIIN 315
+ FLR +NE +I+
Sbjct: 519 LLFLR--MNERNLIS 531
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 520 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 609
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,994,883
Number of Sequences: 37544
Number of extensions: 412694
Number of successful extensions: 1194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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