Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1633
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   0.96 
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    28   6.8  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    28   8.9  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    28   8.9  

>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 401 SSSSCTPVISL-TSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 577
           S+S+ T  +S  TS P +  T    ST  T    +S     T   SS ST+ +SPS  T+
Sbjct: 299 STSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS-STITSSPSSTTL 357

Query: 578 ATYWRTTTSIENFTLLIQL 634
           +T   TTT+ E  + L  L
Sbjct: 358 STSIPTTTTPEITSTLSSL 376


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 401 SSSSCTPVISL-TSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 577
           S+S+ T  +S  TS P +  T    ST  T    +S     T   SS ST+ +SPS  T+
Sbjct: 299 STSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS-STITSSPSSTTL 357

Query: 578 ATYWRTTTSIENFTLLIQL 634
           +T   TTT+ E  + L  L
Sbjct: 358 STSIPTTTTPEITSTLSSL 376


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 398  ASSSSCTPVISLTSWPFSEP-TDLVASTH*TKCRLSSALLL*TVNTSSRS-TVATSPSQE 571
            AS+S  TP  +LTS   + P T  +  T  T+   S  L     +TSS + +  TSP+  
Sbjct: 920  ASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATSTSSSTESTTTSPTTS 979

Query: 572  TVATYWRTTT 601
            T  T   TTT
Sbjct: 980  TTTTLPPTTT 989


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 475 NPLDEVPSKLRAVVVNG---QHIFTFDGRHLTFPGNCRYV 585
           +PLD  P K+ + ++N    ++  TFDG    F  NCR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +2

Query: 413 CTPVISLTSW---PFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSP 562
           C P I +  W   P  +  +     H TKC LS  L    V T + +T  T+P
Sbjct: 88  CPPAICVDQWDNCPLYKLINQCTRYHKTKCPLSCGLCTGNVTTPATTTSTTTP 140


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 112 YSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVV 237
           Y +I KLL   + +D AE  + YV+  L+ QK DD+  L V+
Sbjct: 151 YPHISKLL--YKPKDGAEESYFYVKSSLQFQKSDDKHVLNVL 190


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 407 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNT--SSRSTVATSPSQETVA 580
           SS T V   T    +EP     ST  T+   +++    T  T  +S ST++T+ +  T  
Sbjct: 250 SSLTAVPGTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTP 309

Query: 581 TYWRTTTS 604
           T   TTTS
Sbjct: 310 TTTTTTTS 317


>Z68114-6|CAA92160.1|  316|Caenorhabditis elegans Hypothetical
           protein F17A2.9 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 288 SPQELDERCNSCDQLLIDHAELLLIIAFLVTEFLLNVGVDCFGQI 154
           SP E  ++ N  + ++ DH+ +  +I+  ++ FLL V +  FG +
Sbjct: 153 SPNEAQKKFNELNAIITDHSVIGYVISGRISSFLLTVII--FGSV 195


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 111 QYLGHF*NLLGNYQIVPLLFQIRQYRQRADLFDNVXC 1
           ++L  F   +GN   + L+F+++Q R R+ L  +  C
Sbjct: 15  KFLFLFIGTIGNCLFIHLIFKVKQLRSRSSLLQSAQC 51


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 133 LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLV--QFLRTQLNEFG 306
           +PT E+R    A+ + V   +  +K DD  E++ V +KL+ A+  +      R Q+N   
Sbjct: 335 MPTIENRTKVPAMQA-VLSSIWTRKPDDRPEMQKVLEKLVAALVPIQPDDLKRLQINSLK 393

Query: 307 IINTT 321
            ++ T
Sbjct: 394 GVSRT 398


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 133 LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLV--QFLRTQLNEFG 306
           +PT E+R    A+ + V   +  +K DD  E++ V +KL+ A+  +      R Q+N   
Sbjct: 378 MPTIENRTKVPAMQA-VLSSIWTRKPDDRPEMQKVLEKLVAALVPIQPDDLKRLQINSLK 436

Query: 307 IINTT 321
            ++ T
Sbjct: 437 GVSRT 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,953
Number of Sequences: 27780
Number of extensions: 346043
Number of successful extensions: 1218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)