Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1633
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 28  ALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKL 132
           A+PI++ L E+  DLVV     E   ++ S  ++L
Sbjct: 251 AVPIINTLLERSVDLVVTSTYCEPQVVIVSPTREL 285


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 310  INTTPDFANFFAAPSSIKSA 369
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 192 FLLNVGVDCFGQISAFLRWQ 133
           F +N+G++C  +I   LR++
Sbjct: 464 FRINLGIECGYEIKKLLRYK 483


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 521 TVNTSSRSTVATSPSQETVATYWRTTTSIENFTL 622
           T+NT + S ++ S +   + +   ++TSI + T+
Sbjct: 838 TINTPTTSVISMSGTTVPITSLPASSTSINSITV 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,138
Number of Sequences: 438
Number of extensions: 4295
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)