Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1532
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.13 
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    31   0.23 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.6  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.9  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   6.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 538 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 425
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 622 SGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRD-LAGKA 446
           S  S L+ +  +E +    +  V++ CE  F  +    YL      E  KG+ D L  + 
Sbjct: 165 SKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCEN 224

Query: 445 STLKKMMDK 419
           + LK+ +DK
Sbjct: 225 TALKEKIDK 233


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 604 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 458
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 222 LVFYYKHAFYXRMHRFFLIVYSSVNYKQIWRPWRV 118
           L F   + +Y  +   F I YS      IW PWRV
Sbjct: 662 LFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRV 696


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 613 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 476
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 575 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 465
           H QH   H+  +E L+   PG +     P  + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 592 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 479
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 377  RIERINILHVTPPLRSNPF*NVTSKKI 297
            ++ R+NI HV+ P+ S+ F +  SK I
Sbjct: 1213 KVGRLNINHVSEPIDSDEFADYLSKSI 1239


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -2

Query: 569 QHPGGHQDLREQ---LQRLPPGRLFVRG--IPRRTVQGPTRPRRQGLDPQ 435
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,289
Number of Sequences: 5004
Number of extensions: 48587
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)