Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1532
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 40 0.002
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 34 0.14
12_02_0852 - 23690015-23690545 32 0.42
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.3
12_02_0911 + 24236374-24237582 30 2.3
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.0
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 29 3.9
09_02_0549 + 10485415-10486107 29 5.2
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789... 28 6.9
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 6.9
01_06_1162 + 35010414-35011106 28 9.1
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -3
Query: 610 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 431
A+E AL LE V + + + S ND L D++ EFL+EQ + + ++ + L++
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236
Query: 430 MMDKHAALGEFXFDKKLL 377
+ H G + FD+KLL
Sbjct: 237 VGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = -3
Query: 538 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFXFDKKLL 377
S ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>12_02_0852 - 23690015-23690545
Length = 176
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 672 RNRPSSRTGPPQTRRGRAAHQPS 604
R RPSSRT PP+ RRG + P+
Sbjct: 91 RRRPSSRTSPPRGRRGALVNAPA 113
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 601 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 431
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>12_02_0911 + 24236374-24237582
Length = 402
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 622 SGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 458
+GA+A + A L+L+ S +EV +H+ D+LS +EQY G L
Sbjct: 170 AGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSL 226
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 619 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 512
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 672 RNRPSSRTGPPQTRR-GRAAHQPSSTPSS 589
R +PSSRT PP+ RR R + TPSS
Sbjct: 38 RRQPSSRTSPPRGRRVSRQLYAVPVTPSS 66
>09_02_0549 + 10485415-10486107
Length = 230
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -2
Query: 680 TGSVTDXH-HVQGPRKHVVXERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGR 510
T T+ H +VQ P + ++ + + R P A +HQ+ G +L G
Sbjct: 92 TAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGS 151
Query: 509 LFVRGIPRRTVQGPTRP 459
+R PR+ + P RP
Sbjct: 152 TLLRQHPRQVLSAPGRP 168
>10_08_0531 +
18576913-18578058,18578724-18578843,18578924-18578970,
18579588-18579630
Length = 451
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 678 RLRNRPSSRTGPPQTRRGRAAHQPSSTPS 592
RLR+ SSR G TRRG AH T S
Sbjct: 131 RLRDDSSSRNGAKGTRRGANAHGNGRTAS 159
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 568 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGEFXF 392
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 391 DKKL 380
++++
Sbjct: 1416 NEEI 1419
>01_06_1162 + 35010414-35011106
Length = 230
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -2
Query: 668 TDXH-HVQGPRKHVVXERRISPRARPQA--GE*RHQQHPGGHQDLREQLQRLPPGRLFVR 498
T+ H +VQ P + ++ + + R P A +HQ+ G +L G +R
Sbjct: 96 TNRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLR 155
Query: 497 GIPRRTVQGPTRP 459
PR+ + P RP
Sbjct: 156 QHPRQVLSAPGRP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,024
Number of Sequences: 37544
Number of extensions: 309260
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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