Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1532
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.25 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 649 RAPANTSWXSGASALEHALKLESDVTNSI 563
           R P   SW S  + +  A KL+ ++ NSI
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 561 RMLLVTSLSSLRACSRADAPLXHDVFAG 644
           R+LL++++  +  CS  +  L  D+F G
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRG 37


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = -2

Query: 470 PTRPRRQGLDPQEDDGQTRRPRRVHXRQETPRIERINILHVTP 342
           P   +R G    E+      P+R+      P + R    H TP
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISCHTTP 664


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 539  EQLQRLPPGRLFVRGIPR 486
            ++L++LP G LF++ + R
Sbjct: 1321 DRLRQLPEGSLFIKEVDR 1338


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = -2

Query: 719  PKXIXYLFMRXKXTGSVTDXHHVQGPRKHVVXERRISPRAR----PQAGE*RHQQHPGGH 552
            P+ +  L    K      +    Q P + +   +   P+A+    PQ  + + QQ P   
Sbjct: 785  PEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQ 844

Query: 551  QDLREQLQRLPPG 513
            Q  ++Q Q+   G
Sbjct: 845  QQQQQQQQQQQRG 857


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 458 RRQGLDPQEDDGQTRRPRRV 399
           R+Q +DP   + Q  R RRV
Sbjct: 96  RKQTIDPLSSNTQITRKRRV 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,241
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)