Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1531
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   0.86 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   1.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   6.1  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    24   8.0  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   FFFYARVTSFNVKSAEYKHYSTSP*I*YCSQNFIIILIKYF 131
           FF     T FN +SA  K+Y   P I     N I+IL+ YF
Sbjct: 144 FFIRNDPTPFNARSANLKNYIAFP-ICLFVINHILILLGYF 183


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 99  DYNIKFKDLYCNVCIRHF 46
           D N++F DL C+VC+  F
Sbjct: 48  DRNLRFPDLQCSVCLNMF 65


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 172 NFLPFPVFISKQFMKYLISI 113
           N  PFP FISK+ + Y + I
Sbjct: 229 NNAPFPNFISKEILHYYLFI 248


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 53  RIQTLQYKSLNLIL*SKFYYYTD 121
           +++T+Q    NL L   FYYY D
Sbjct: 175 KLRTVQSCGTNLSLLDNFYYYQD 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,152
Number of Sequences: 5004
Number of extensions: 19053
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)