Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1531
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AL110485-31|CAB60352.2|  280|Caenorhabditis elegans Hypothetical...    27   4.0  
Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>Z83221-2|CAB05708.1|  444|Caenorhabditis elegans Hypothetical
           protein C49A1.3 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 18  YARVTSFNVKSAEYKHYSTSP*I*YCSQNFIIILIKYFINCLLIK 152
           YA +T F+ K+A    Y T+P     SQ  I  +  YF  CL  +
Sbjct: 223 YAEITEFHEKTATLSTYDTTPIPLAYSQIVIFSVRLYFFICLFTR 267


>Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical
           protein C50B6.6 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 169 FLPFPVFISKQFMKYL-ISIIIKF 101
           +LP+PVF    F+KYL IS +I+F
Sbjct: 84  YLPYPVFRGAGFLKYLDISGLIQF 107


>AL110485-31|CAB60352.2|  280|Caenorhabditis elegans Hypothetical
           protein Y46G5A.7 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 152 LYKQTIYEIFNQYNNKILTTILNLRTCTVMFVFGTF 45
           LY+   YE     NN  ++ +     C  +FVFG F
Sbjct: 242 LYRYENYEFLTTCNNGKVSDLTIFENCFFLFVFGDF 277


>Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical
           protein ZC455.6a protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 110 NKILTTILNLRTCTVMFVFGT 48
           +K L TILNLR+ TV   +GT
Sbjct: 290 SKDLDTILNLRSSTVFISYGT 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,579,041
Number of Sequences: 27780
Number of extensions: 101206
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)