Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1531
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   0.77 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.5  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 SSISCLYKQTIYEIFNQYNN 108
           SS+S  YK + Y  +N YNN
Sbjct: 316 SSLSNNYKYSNYNNYNNYNN 335


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 255 CLPYFFTYYFTFSQPIDTFL 196
           CL Y F +      PID FL
Sbjct: 398 CLEYLFFFKMIGDVPIDDFL 417


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 255 CLPYFFTYYFTFSQPIDTFL 196
           CL Y F +      PID FL
Sbjct: 398 CLEYLFFFKMIGDVPIDDFL 417


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 170 IKNFMELQLRKV 205
           +K+FMEL LR V
Sbjct: 834 VKSFMELSLRSV 845


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 152 LYKQTIYEIFNQYNNKI 102
           LY   +   +NQYN++I
Sbjct: 620 LYVSPVSSEYNQYNSRI 636


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 152 LYKQTIYEIFNQYNNKI 102
           LY   +   +NQYN++I
Sbjct: 620 LYVSPVSSEYNQYNSRI 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,446
Number of Sequences: 438
Number of extensions: 1394
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)