Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1528
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.94 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.0  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 266 FNHTFSAITHHIVAIYFHRCVWFFHWTCDIVFL 364
           FN  F+A T  +++ +   CVW      D+VF+
Sbjct: 637 FNENFNATTFGLLSSFTKHCVWLKFRNFDLVFM 669


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 711 TAQSKGLIRSXKGEPDCISLKNI*NQGPLAM*HSVATVRXEMSNIPLS*SPFTMEKTHVL 532
           T+  + LIR  +   +  SLK+I          ++++++ E SNI L  +  T E++  L
Sbjct: 663 TSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLAL 722

Query: 531 VKCVD 517
            K  D
Sbjct: 723 EKLND 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,615
Number of Sequences: 5004
Number of extensions: 55488
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)