Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1528
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216...    30   2.3  
08_02_0794 + 21265399-21265683,21266047-21266160,21266861-212671...    29   3.9  
04_04_0278 - 24106072-24106254,24106854-24106898,24106985-241070...    28   6.9  

>08_02_1152 +
           24720397-24720636,24720739-24720951,24721617-24721697,
           24721781-24721867,24721970-24722065,24722179-24722232,
           24722326-24723375,24723468-24723507,24723551-24723756
          Length = 688

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 331 PNTPVEVDSNDMMGDSGEGMIKTPPVKDDNINRSVVGGLGSTPNS 197
           PNT  E D +D+  D  +   K  P  DDN + +V  G G++ +S
Sbjct: 347 PNTKFEPDPDDVGQDFSQDNTKVEPDPDDNDDMNVDVGTGASWSS 391


>08_02_0794 +
           21265399-21265683,21266047-21266160,21266861-21267126,
           21267336-21267834
          Length = 387

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 182 SHCVTRIRCTAKATHNGTVDII-IFYWRCFNHTFSAITHHIVAIYFHRCVWFFHWTC--D 352
           SH    I  TA +   G  +II + +W  F+H ++AI+H   +I     +   HW    D
Sbjct: 168 SHQYAAISHTAASI--GVREIIPLAHW--FSHQYAAISHTATSIGVREIILLVHWFSHHD 223

Query: 353 IVFL 364
           +VFL
Sbjct: 224 VVFL 227


>04_04_0278 -
           24106072-24106254,24106854-24106898,24106985-24107068,
           24107191-24107389,24108281-24108432
          Length = 220

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 445 LSCCCQESIYHHKLPQLLMYFLYVVHAFDENV 540
           ++ CC+E  Y  ++ QLL++ L  +HA+D+ V
Sbjct: 72  ITVCCEEIRYKDEITQLLIHEL--IHAYDDCV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,441
Number of Sequences: 37544
Number of extensions: 334033
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)