Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1528
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07450-1|CAA30332.1|  500|Drosophila melanogaster protein ( Dros...    45   1e-04
AY052139-1|AAK93563.1|  488|Drosophila melanogaster SD09738p pro...    45   1e-04
AE013599-4012|AAF47312.2|  488|Drosophila melanogaster CG3533-PA...    45   1e-04
AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p pro...    31   2.2  
AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA, ...    31   2.2  
X55393-1|CAA39067.1|  659|Drosophila melanogaster S59 protein pr...    29   8.9  
AE014297-3018|AAF55901.3|  659|Drosophila melanogaster CG6534-PA...    29   8.9  

>X07450-1|CAA30332.1|  500|Drosophila melanogaster protein (
           Drosophila mRNA forzipper protein. ).
          Length = 500

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = -3

Query: 643 LEPGTACNVTFSGNRTXRDVEYTAKLITFYNGKDPR-SRQMRGQRIENTL-EVEAVYGDI 470
           L PGTA NVT  GN    +  Y+ KL  FY G D   SR++  +  ++ L EV+  +  +
Sbjct: 310 LWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKISAEVRKSYLKEVKLEFSPV 369

Query: 469 YFLGNSSL 446
           Y++ N +L
Sbjct: 370 YWIENGTL 377


>AY052139-1|AAK93563.1|  488|Drosophila melanogaster SD09738p
           protein.
          Length = 488

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = -3

Query: 643 LEPGTACNVTFSGNRTXRDVEYTAKLITFYNGKDPR-SRQMRGQRIENTL-EVEAVYGDI 470
           L PGTA NVT  GN    +  Y+ KL  FY G D   SR++  +  ++ L EV+  +  +
Sbjct: 310 LWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKISAEVRKSYLKEVKLEFSPV 369

Query: 469 YFLGNSSL 446
           Y++ N +L
Sbjct: 370 YWIENGTL 377


>AE013599-4012|AAF47312.2|  488|Drosophila melanogaster CG3533-PA
           protein.
          Length = 488

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = -3

Query: 643 LEPGTACNVTFSGNRTXRDVEYTAKLITFYNGKDPR-SRQMRGQRIENTL-EVEAVYGDI 470
           L PGTA NVT  GN    +  Y+ KL  FY G D   SR++  +  ++ L EV+  +  +
Sbjct: 310 LWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKISAEVRKSYLKEVKLEFSPV 369

Query: 469 YFLGNSSL 446
           Y++ N +L
Sbjct: 370 YWIENGTL 377


>AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p
           protein.
          Length = 499

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 673 GTRLHKLEKYLEPGTACNVTFSGNRTXRDVEYTAKLITFYNGKDPRSRQMRGQRIENTLE 494
           GT+L +  K+ +P  +C V  + +     +  + + I FY+   P S   RG+R  +T+ 
Sbjct: 125 GTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKP-SMNERGEREIDTIS 183

Query: 493 VEA 485
           V +
Sbjct: 184 VSS 186


>AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA,
           isoform A protein.
          Length = 758

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 673 GTRLHKLEKYLEPGTACNVTFSGNRTXRDVEYTAKLITFYNGKDPRSRQMRGQRIENTLE 494
           GT+L +  K+ +P  +C V  + +     +  + + I FY+   P S   RG+R  +T+ 
Sbjct: 389 GTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKP-SMNERGEREIDTIS 447

Query: 493 VEA 485
           V +
Sbjct: 448 VSS 450


>X55393-1|CAA39067.1|  659|Drosophila melanogaster S59 protein
           protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 319 VEVDSNDMMGDSGEGMIKTPPVKDDNINRSVVGGLGSTPNSGNT 188
           + VD ND   DS +G   TP V   ++ RSV     + P+S +T
Sbjct: 391 LNVDGNDE--DSNDGSHSTPSVCPVDLTRSVNSSAAANPSSAST 432


>AE014297-3018|AAF55901.3|  659|Drosophila melanogaster CG6534-PA
           protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 319 VEVDSNDMMGDSGEGMIKTPPVKDDNINRSVVGGLGSTPNSGNT 188
           + VD ND   DS +G   TP V   ++ RSV     + P+S +T
Sbjct: 391 LNVDGNDE--DSNDGSHSTPSVCPVDLTRSVNSSAAANPSSAST 432


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,179,576
Number of Sequences: 53049
Number of extensions: 582693
Number of successful extensions: 1185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)