Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1527
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    28   1.8  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   4.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.5  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 252 TFQILFQPFIYIIHMWVDELTAHLSLVVTRAXRHXQSKC 368
           T++ + +PF Y+  +WVD +++ L+     A     S+C
Sbjct: 93  TYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRC 131


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 279 IYIIHMWVDELTAHLSLVVTRAXRHXQSKCRHLP*DMSSK 398
           ++I+H     L  H+  +V  A  +  SKCR +P   S++
Sbjct: 82  VFILHDQDSMLVTHMPQLVANANFYGSSKCRLVPLGFSAQ 121


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 171 LLTCTIALILS*PSXYSXHIMK 236
           LLTC++ L L+    +S H+MK
Sbjct: 333 LLTCSVCLFLTYVGGFSVHMMK 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,651
Number of Sequences: 5004
Number of extensions: 38566
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)