Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1527
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    28   6.8  

>U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical
           protein F13D11.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 454 SLQKKAGWWFVPVHSQDVQTPVTIFNTVLIF 546
           +L +KA W F+    +D + P+T+ N  L+F
Sbjct: 159 TLAEKAAWDFIERLPEDKKFPMTVINPTLVF 189


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +1

Query: 415 TAVTPXKPKYITVSLQKKAGWWFVPVHSQDVQTPVTIFN-TVLIFNNTILHSFKTLSITY 591
           T ++   P+ I + LQ +     VPV +      V+ FN ++L+FN+T +  + TLS++ 
Sbjct: 28  TCISLLDPQLIDLKLQTR----MVPVPAT-FAIIVSFFNFSLLLFNHTYISHYATLSLSS 82

Query: 592 YTTNFKY 612
           ++  F++
Sbjct: 83  FSFFFRH 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,307
Number of Sequences: 27780
Number of extensions: 215896
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)