Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1526
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   137   2e-33
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   4.5  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   7.9  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   7.9  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   7.9  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   7.9  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   7.9  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  137 bits (331), Expect = 2e-33
 Identities = 77/190 (40%), Positives = 94/190 (49%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTG+ P KTS FQAL IPTKI++G IEI +DVH++    KVG S ATLLNMLNI P +YG
Sbjct: 125 NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYG 184

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           + V  +YD G +F+PEI D+  ED                    YPTI S  HS+ N +K
Sbjct: 185 MDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYK 244

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 156
           NL+                K F+ DPS F                              S
Sbjct: 245 NLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEES 302

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 433 LARXSSGLMSXISGAKIVPESYTCLTTR 516
           LAR SS      SGAK+VP+ +  +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 155 DDDMGFGLFD 126
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,386
Number of Sequences: 5004
Number of extensions: 32086
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)