Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1526
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...   151   7e-37
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...   150   9e-37
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...   150   9e-37
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065...    31   0.88 

>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score =  151 bits (365), Expect = 7e-37
 Identities = 81/190 (42%), Positives = 101/190 (53%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGL P +TS FQ L IPTKI+KG +EII  V ++K GDKVG+S + LL  L I P SYG
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYG 189

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           LV+  VYDSG++F+PE+ D+  +D   KF            AI YPTIA+APH   NG+K
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYK 249

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 156
           N+L               IKE++KDPSKF                              S
Sbjct: 250 NVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEES 309

Query: 155 DDDMGFGLFD 126
           D D+G  LFD
Sbjct: 310 DGDLGMSLFD 319


>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score =  150 bits (364), Expect = 9e-37
 Identities = 75/149 (50%), Positives = 93/149 (62%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGL P +TS FQ L IPTKI+KG +EII  V ++K GDKVG+S + LL  L I P SYG
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYG 189

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           LV+  VYDSG++F+PE+ D+  ED   KF            AI YPTIA+APH   NG+K
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYK 249

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF 249
           N+L               IKE++KDPSKF
Sbjct: 250 NVLAVAVETEYSYPHADKIKEYLKDPSKF 278


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score =  150 bits (364), Expect = 9e-37
 Identities = 75/149 (50%), Positives = 93/149 (62%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGL P +TS FQ L IPTKI+KG +EII  V ++K GDKVG+S + LL  L I P SYG
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYG 189

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           LV+  VYDSG++F+PE+ D+  ED   KF            AI YPTIA+APH   NG+K
Sbjct: 190 LVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYK 249

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF 249
           N+L               IKE++KDPSKF
Sbjct: 250 NVLAVAVETEYSYPHADKIKEYLKDPSKF 278


>03_03_0258 -
           15905847-15905990,15906088-15906244,15906374-15906504,
           15906991-15907126,15907193-15907464,15907874-15908169,
           15908279-15908646,15908922-15908987,15909064-15909129,
           15909226-15909297,15909391-15909459,15909549-15909620,
           15909708-15909776,15909874-15909945,15910046-15910178,
           15911223-15911361
          Length = 753

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 487 PESYTCLTTRPYXNGKMFNMLRRVAXEAPTLSPGFKMCTSL 609
           PE    LT RP  +GK FN LR ++  +PT   G +   S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,256,809
Number of Sequences: 37544
Number of extensions: 233864
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)